| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1470 |
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| Symbol | |
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| ID | 4277566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1757008 |
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| End bp | 1760430 |
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| Gene Length | 3423 bp |
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| Protein Length | 1140 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134251 |
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| Product | periplasmic sensor hybrid histidine kinase |
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| Protein accession | YP_750160 |
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| Protein GI | 114562647 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTAA CCTTAATCGT TGCCGTGATT GCGGTATGTT ATGTGTCATT GCTGTTTATT
TTGGCATGGG GTGCCGAGCG GTGGTTTAGT AAAATAAATC AAAAAGCTCA AGTATGGATT
TATGGGCTCA GCTTAGCGGT GTATTGCTCA TCATGGAGTT TTTTAGGCAC AGTAGGTCAG
TCTGCCAATG ATTTATGGTC ATTTCTACCT ATTTTTGTCG GCCCAATATT AGTGTTTACT
CTTGGGTTTG GCATGCTACG AAAAATGGTT GTGGTGTCTA AAGCACAAAA CATTACTTCA
GTTGCCGACT TTATTGCTGC TCGTTATGGC AAGTCACAGT TATTAGCCGC TTTAGTCACG
CTTATTGCAT TGTTTGGCAT CATGCCTTAT ATCGCACTAC AGCTTAAAGC AATGGTGTTT
AGCCTTAACT TATTTCAACC TGATGATACC CCCTTAAGCC CAGTGGCGGT GCCATTATTG
ATCACCATGT TACTGGCCAT TTTTGCCATT TTATTTGGTA CGCGTAAATT AGATGCGACT
GAACATAATC CTGGAATGAT GGTCGCGATT GCGTTTGAGT CATTGGTTAA ACTTGCGGCA
TTTATCTCAG TCGGTTTGGT GATTAGTTTT GGTGTTTTTG ATGGCTTTGG CGATATTTGG
CAGCAGGCAT CAGATAAAGC ATTAATCGAA AATAGTCACA TTCGTTTAGA GTCGTTTCTC
CCTGAACTAT TTGTTGGTAT GGCAGCGTTT TTGTGTATGC CAAGGCAGTT CCATGTGATG
GTGGTTGAAT GTGGCGGCGA GCATATTTTA AAGAAATCTC GCTGGATATT TCCGATTTAT
TTAGCCTTGT TTGGCATGTT TGTCGCGCCA TTGGCATTAG CCGGTAAAAT TATTCTGGGT
GATTCGGTAT CTGCTGATAC TTATGTTATT AATTTGCCTT TGGCACTAGA CCAACCAATA
TTAGCGGTTG TAGCCTTGTT AGGTAGTTTG TCTGCGGCAA CTGGGATGGT GATCGTGGCC
GTAGTGACCA TCAGTGTGAT GGTCAGTAAT GAGTGGTTGG TGCCATTTTT GCTGCGAACG
GGGCAAATAA GAGAAAAGAA CTTTAGCCAA TTTTCTCAAT TATTATTAAA TGTCCGCCGT
TTATCGATTG TGGTTATTCT AGGTTTTGGC TATTTAAGTT ATTTACTGTT TACTGACAGT
GACTCGCTTT CACATTTAGG AATGATGTCC TTTGGCGCAT TTTCTCAACT AGCGCCGGCA
TTAGTCGGTG GATTATATTG GAAGCACGGT AATCGAGCGG GTGTTTATCT TGGCCTAGCT
GTCGGTTTTA GCTTGTGGTG TTTTATTTTA CTTCAAGGTG CAGGCGAGGC TCGTTTACTC
GGTAGTGAGT CTGGCTTACT CAATTCAATA ACCCCAAATA TTAGTGATAC ATTAATCGCT
TTGTTAGCGA ATATATTTTG TTATGTGTTG GGTTCTATTT GGTTTAGAGC GGGCGTTGCC
GAACGTATTC AAGCAAGTAA TTTTGTTAAA CCTTGGTCAT CTAAGAAAGA TTCGAAGAAA
CGTCAAGGGC CTATTTCGCA ACAAGATTTA TTAATTTTAG CAAGCCGATT TGTGAGCCCA
ACTCGTGCTT ATGAAAGCTT TAGTCGTTTT TCTGCCGATG CAGTTAAAAG TGACAGTTGG
TACAAAGCAG CTCCAGAAGA ATTAATTGCT CACACTGAAC ACATGCTGTC GGGTGTTTTA
GGTGCATCAA GTGCATCATT AGTGATGGAC TCTGTCCTAC AAGGCCGCGA TTTGGCGCTG
GATGAAGTAT TCAGTCTTGT AGATGAAGCA TCCTCTAAAA TTATTTTAAG TCAGGATATG
CTGCGCGGTG CAATTGAACA CGCTTATGAA GGTATGAGTG TGGTCGACAA AGACCTAAGC
TTGGTTGCGT GGAATTATCG CTATGTTGAA TTGTATCAAT ATCCTGAAGG CTTTTTACAA
CAAGGAATGC CTATTGCTGA AGTGGTGCGG TTTAATGCGT TGCGCGGCTT TTGTGGCTCG
GGAGACATTG AAAATCAGGT AGCAGTGCGG GTACAGCATA TGCGTAATGG CACTCCGCAC
ACATCTGAGC GTGAACGCCA AGATGGTAAA GTGATTAAAA TTCAAGGTAA TCCAATGCCC
GATGGTGGCT TTGTGATGAC ATTTACCGAT ATTACTCAAT ATCGTTTGCA AGAAAAAGCG
TTACTGGAAG CCAACGAAAC TCTAGAAAGT CGTGTGCAAG AACGAACCTA TGAATTGGCG
ATGCTAAACA GTGAATTACT TGAAGCAAAA GCGCAAGAAG AGCTCGCTAA TGCGTCTAAA
ACTCGATTTT TAGCCGCCGT CGGTCACGAT CTAATGCAGC CATTAAATGC GGCAAGGTTA
TTTACGGCCT CATTATCGCA ATATCCTAAT CTAGATTTAG AAGCCCGCAC CACGCTAACT
CATGTAAACA GTTCGTTGAA AATAGCGGGA GAGTTATTGA CCGATTTACT CGATATCTCA
AAACTCGACT CTGGCATGGT GGACGTTAAT CGTCGTGATT TTGCTATCGC AGAGGTGATT
AACGGTTTAT CGGTTGAATT TGACGCCATG GCCAGTGATA GCCAAATTTC GTTTTCAATG
GTGCCTTCAA AAGCGACAGT TAACTCCGAC CCTTCATTAT TACGACGTAT TTTGCAAAAC
TTTTTAACCA ATGCATATCG ATATGCCCGT GGTGGAAAAG TATTATTTGG TTGCCGCCAT
CGAGGTGATT TTATCGAAAT CCAAGTGTTA GATACTGGCT GTGGGATAAA TGAGTTTGAT
ATACAAGAAA TTTTTAAAGA GTTTAAACGT CTTAATCATC CCAGTAGCCG TAATGTTGGC
GGCTTGGGAT TGGGATTGGC GATTGCCGAT CGGATTAGTA AAGTACTTGA TCATCAAATT
CATGTAAGTT CAACTTTAGG TCATGGTTCT CTATTCTCTA TATTCGTGCC ATTAGGTGAA
ACGGTCAGCA AAATAAGTAG TAAACCTTTA CCGACATTAT TGCAGCCTTT AGCTGGCATT
AAAGTCTTGT GTATTGATAA TGAAGAAGCC ATTCTCGCGG GGCTAGAGTC TTTGTTAAGT
CGTTGGCAAT GTGAAGTTAT TTGTGCCAAA GACCTTGCCG ATGCTCGAAT TAAATTAGGG
CTTAAAGGAG TCGCCCCAGA CATTATGTTA GCTGATTATC ATTTAGATGA TGACCAAAAT
GGTATTGATG CGATGAATGG TATTCGCAGT CGTTATGGTG AGCATTTACC AGGGATATTA
ATTACTGCCA ATACTAATAA AGATTTGATT GATGATGTTG AAAAACGTGG CTATCACTAT
ATGGCAAAGA TGGTAAAACC TGCCGCATTG CGTGCGTTAA TTTCTAGTCT TGTTAAAAAG
TAA
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| Protein sequence | MNLTLIVAVI AVCYVSLLFI LAWGAERWFS KINQKAQVWI YGLSLAVYCS SWSFLGTVGQ
SANDLWSFLP IFVGPILVFT LGFGMLRKMV VVSKAQNITS VADFIAARYG KSQLLAALVT
LIALFGIMPY IALQLKAMVF SLNLFQPDDT PLSPVAVPLL ITMLLAIFAI LFGTRKLDAT
EHNPGMMVAI AFESLVKLAA FISVGLVISF GVFDGFGDIW QQASDKALIE NSHIRLESFL
PELFVGMAAF LCMPRQFHVM VVECGGEHIL KKSRWIFPIY LALFGMFVAP LALAGKIILG
DSVSADTYVI NLPLALDQPI LAVVALLGSL SAATGMVIVA VVTISVMVSN EWLVPFLLRT
GQIREKNFSQ FSQLLLNVRR LSIVVILGFG YLSYLLFTDS DSLSHLGMMS FGAFSQLAPA
LVGGLYWKHG NRAGVYLGLA VGFSLWCFIL LQGAGEARLL GSESGLLNSI TPNISDTLIA
LLANIFCYVL GSIWFRAGVA ERIQASNFVK PWSSKKDSKK RQGPISQQDL LILASRFVSP
TRAYESFSRF SADAVKSDSW YKAAPEELIA HTEHMLSGVL GASSASLVMD SVLQGRDLAL
DEVFSLVDEA SSKIILSQDM LRGAIEHAYE GMSVVDKDLS LVAWNYRYVE LYQYPEGFLQ
QGMPIAEVVR FNALRGFCGS GDIENQVAVR VQHMRNGTPH TSERERQDGK VIKIQGNPMP
DGGFVMTFTD ITQYRLQEKA LLEANETLES RVQERTYELA MLNSELLEAK AQEELANASK
TRFLAAVGHD LMQPLNAARL FTASLSQYPN LDLEARTTLT HVNSSLKIAG ELLTDLLDIS
KLDSGMVDVN RRDFAIAEVI NGLSVEFDAM ASDSQISFSM VPSKATVNSD PSLLRRILQN
FLTNAYRYAR GGKVLFGCRH RGDFIEIQVL DTGCGINEFD IQEIFKEFKR LNHPSSRNVG
GLGLGLAIAD RISKVLDHQI HVSSTLGHGS LFSIFVPLGE TVSKISSKPL PTLLQPLAGI
KVLCIDNEEA ILAGLESLLS RWQCEVICAK DLADARIKLG LKGVAPDIML ADYHLDDDQN
GIDAMNGIRS RYGEHLPGIL ITANTNKDLI DDVEKRGYHY MAKMVKPAAL RALISSLVKK
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