Gene Sfri_1460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1460 
Symbol 
ID4278464 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1744648 
End bp1745076 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content43% 
IMG OID638134235 
Productbiopolymer transport protein ExbD/TolR 
Protein accessionYP_750150 
Protein GI114562637 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID[TIGR02801] TolR protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00381179 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCAGC GTAAACGTCG TCGTCCAGTT GCAGAAATCA ACGTTGTACC TTACATCGAC 
GTGATGTTGG TGTTGTTGAT TATTTTTATG GTGACAGCGC CTATTGTATC GCAAGGAGTC 
AAAGTAGAAT TACCTCAAGG TAATGCCGAG TCTTTACCAC CTGATAGTAA GCCTCCTATC 
GTTGCATCGA TTGACGCGGC TGGACAATAT TTCTTGAATA TCGGCAGTAG TTCTAACTCT 
GAAGTTATGG ACTTAGAACA AGTGTCGACT GAAGTTGGAG CGTTAATCCA GCTTGAACCG 
TTAAGGCCTG TGGTAGTAAA AGCTGACCGC ACGATACCTT ATGAAAGCGT TATTCAATTA 
ATGATTAGTT TGCAAGGTGC TGGTGTGCCT GCTGTAGGGT TAATGACCGA TTCACCGAAG 
GAGAAATAG
 
Protein sequence
MYQRKRRRPV AEINVVPYID VMLVLLIIFM VTAPIVSQGV KVELPQGNAE SLPPDSKPPI 
VASIDAAGQY FLNIGSSSNS EVMDLEQVST EVGALIQLEP LRPVVVKADR TIPYESVIQL 
MISLQGAGVP AVGLMTDSPK EK