| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1459 |
|---|
| Symbol | |
|---|
| ID | 4278463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1743959 |
|---|
| End bp | 1744648 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638134234 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_750149 |
|---|
| Protein GI | 114562636 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | [TIGR02796] TolQ protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00757308 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACGCTG AAATTTCATT TATTGGTTTG TTTTTAGAAG CCAGTGTGTT GGTAAAGTTA
GTTATGCTGA CCTTGTTGGC ATTATCGATT GCCTCATGGG CAGTGATCAT TCAACGCAAC
AAATTATTAG GCTCTGCAAG AGTTAAGTCA TTACGTTTTG AAGAAACGTT TTGGTCAGGT
GTTGATTTAA ACCGTCTTTA CAAAGAATTA ATAGCACGTG GTAGTGCTAT CTCTGGTTTA
GAATCGATGT TTGTGGCAGG TTTTAAAGAA TATACTCGTT TGAGCAAAGT AAACAGTAAA
GCACCTGAAG CTGTTATGGA TGGAACTTCT CGAGCAATGC GAGTGAGTTT GTCGCGAGAA
ATGGAAAAGC TTGAAAACCA TTTGCCGCTA TTGGCAACGA TTGGTTCTAC CAGCCCATAC
ATTGGTTTGT TTGGGACGGT ATGGGGAATT ATGAATTCCT TTATTGCACT GGGCGCCGTT
GAAAATGCCA CTCTTGCCAT GGTTGCACCA GGTATTGCAG AAGCATTGAT TGCAACCGCA
ATGGGCTTGT TTGCTGCTAT ACCTGCCGTT ATTGGTTATA ACCGTTTTAC AACGCAAGTT
GATAAAATTG AAATGACTTA TGCTAACTTT ATGGAAGAAT TCTCCAACAT ATTGCAACGT
CAAGCGTATA GCGAGAAGGA AGCTGTTTAA
|
|---|
| Protein sequence | MHAEISFIGL FLEASVLVKL VMLTLLALSI ASWAVIIQRN KLLGSARVKS LRFEETFWSG
VDLNRLYKEL IARGSAISGL ESMFVAGFKE YTRLSKVNSK APEAVMDGTS RAMRVSLSRE
MEKLENHLPL LATIGSTSPY IGLFGTVWGI MNSFIALGAV ENATLAMVAP GIAEALIATA
MGLFAAIPAV IGYNRFTTQV DKIEMTYANF MEEFSNILQR QAYSEKEAV
|
|---|
| |