Gene Sfri_1453 details

Gene Information

• Locus tag: Sfri_1453
• Symbol: upp
• ID: 4278457
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1737324
• End bp: 1737950
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638134228
• Product: uracil phosphoribosyltransferase
• Protein accession: YP_750143
• Protein GI: 114562630
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0035] Uracil phosphoribosyltransferase
• TIGRFAM ID: [TIGR01091] uracil phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.173274
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTCG TTGAAGTAAA GCATCCTCTG GTTCGTCATA AAGTTGGTTT AATGCGTGAA 
GCGGATATCA GCACCAAACG ATTTCGTGAA CTCGCCACTG AAGTTGGCAG TTTATTAACC 
TACGAAGCTA CCGCTGATTT TGAAACTGAA ACGGTGACAA TTGAAGGTTG GAATGGCCCT 
GTTACTATTG AGCAACTTAA AGGTAAGAAA GTAACTGTAG TGCCTATTTT ACGTGCCGGT 
TTAGGCATGA TGGATGGCGT TCTTGAGCAT TTACCCAGTG CGCGTATTTC TGTAGTGGGT 
ATTTATCGTG ATGAAGAAAC ATTACAACCA GTACCTTACT TTGAAAAAAT AGTCAGTAAT 
GTAGATGAGC GTATCGCTTT AGTGGTTGAC CCGATGTTAG CAACTGGCGG TTCAATGATT 
GCGACTATCG ACCTGCTGAA AAAACGCGGT TGTACTTCAA TTAAAGCGTT AGTTTTGGTT 
GCCGCGCCAG AAGGCATTAA AGCACTTGAA TTAGCTCATC CTGATATTGA GTTGTATACC 
GCTTCGATCG ATGATTGCTT AAACGAGCAA GGCTATATTT TGCCAGGTTT AGGTGATGCG 
GGTGATAAGA TATTCGGTAC CAAATAA 

 

Protein sequence

MKVVEVKHPL VRHKVGLMRE ADISTKRFRE LATEVGSLLT YEATADFETE TVTIEGWNGP 
VTIEQLKGKK VTVVPILRAG LGMMDGVLEH LPSARISVVG IYRDEETLQP VPYFEKIVSN 
VDERIALVVD PMLATGGSMI ATIDLLKKRG CTSIKALVLV AAPEGIKALE LAHPDIELYT 
ASIDDCLNEQ GYILPGLGDA GDKIFGTK