| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1447 |
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| Symbol | |
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| ID | 4278451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1727270 |
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| End bp | 1731145 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134222 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_750137 |
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| Protein GI | 114562624 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.236687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATTCGG ACCTTCACCC GCTATCTAAG GCGTATCTCA ATCTTTGTTA TCAAACCGAT
GCTGCTAAAA TTCGTCGTCG TTTGTATCGT GTCAATAAAG AAGCCGAGTC TGAAAAAAAA
TCCCAAACGT TAGCTCAGTT AACTGAAGCT GCGCAGCAAG CCTATCAAAA AGCGCAACAG
CGCTTGCAGT CTAGACCTAT TATCAGTTAT CCAGATGAAC TGCCTGTGTC GCAAAAACGT
GACGATATAG CCTCTGCTAT TGCCAATAAT CAAGTGGTGA TTGTGGCGGG GGAGACTGGG
TCTGGTAAAA CCACTCAGTT ACCTAAAATC TGTCTTGAAT TGGGATTAGG AACGAGAGGC
TTAATTGGCC ATACTCAGCC TCGTCGTCTT GCTGCTCGAA GTGTTGCGAA CCGTATTGCT
GATGAACTTA ACAGCCCATT AGGCGAAGTT GTTGGCTTTA AAGTTCGTTT TGCTGATGCC
ATGAGCGACA ACAGTTACAT TAAACTGATG ACCGACGGTA TTTTGCTCGC CGAACTCACC
TCAGATCGAT TTCTCAACCA GTATGATGCG ATTATTATTG ATGAAGCGCA TGAGCGCAGC
TTAAACATTG ATTTTATATT GGGATATCTG AAGCAGGTAT TAAAGAAACG TCCTGATTTA
AAAGTTATTA TTACTTCAGC TACCATTGAT GTAGATCGCT TTTCAAAACA CTTTAATAAC
GCACCTGTTA TTGAAGTGTC TGGGCGTACT TTTGAAGTTG AAACGCGTTA TCGTCCTTTA
GTTCGCGACA CTGATGCTGA TTTAGATGTC AGCGATGGTA TTTTTGCTGC CGTAGAAGAG
TTAATGGCCG CTGGCCCTGG CGACATATTG ATATTTATGA ATGGTGAGCG CGAAATTCGC
GATACCGCAG ATTTACTCAA TAAACAGCAA TATCGCGATA CTGAAGTTTT ACCACTATAC
GCGCGTCTTT CTTATGGTGA ACAATCTAAA GTCTTTAAAA GCCACATTGG CCGCCGTATC
GTATTAGCCA CCAACGTTGC CGAAACGTCA TTAACCGTAC CTGGGATCCG TTATGTTATC
GATCCTGGTA CTGCTCGAAT AAGCCGTTAT AGTTACCGCA CGAAAGTACA ACGTTTACCG
ATAGAACCTA TTTCGCAAGC CAGTGCCAAT CAGCGTCAAG GACGTTGTGG TCGTGTAGGA
CCGGGTATTT GTATTCGACT TTACGATGAA ATGGATTTTA TTCAGCGTCC CGAATTTACC
GATCCTGAAA TATTACGAAC CAATCTTGCT TCAGTGATAT TACACATGCT CGCGATTGGA
TTAGGTGACA TTGGCGGATT TCCATTTATT CAACCACCGG ACCAAAAGCA CATTCGTGAC
GGTTTTTTAT TGCTTGAAGA GTTACAAGCG GTTAAAAAAT CGGGACATGA TCTAGTGTTA
ACGCCATTAG GCAAAGACTT AGCCAAAATC CCACTCGATC CGCGCTTGGC CCGAATGGTC
ATTGAAGCGA ATAAATTGGG TTGTTTACAC GAAGCGTTAG TGATAACTGC AGGTTTGTCG
ATTCAAGATC CGCGTGAACG TCCAGCGGAA AAGAAACAAG CAGCAGACGA GTGTCATCGC
CGTTATGCTG ATAAAGATTC AGACTTTGCC AGCTGGGTAA AGTTATGGGA TCACGTAAAA
GATCAAAAGC ATGAGCTATC AGCCAGTCAG TTTAGAAAAC AATGTCGTGA CGAATATCTC
GCGTATTTAC GCGTACGTGA ATGGCAAGAT TTATACACTC AAGTGAAACA AGCCGTCCAT
GAATTGAAAT GGCGTATTAA TGACAGTGCA GCCAGTTACG AACAGTTACA TAGAGCATTA
TTATCAGGCT TGTTAAGTCA TGTTGGTTTT AAAGGCGAGA ACAACGAGTA TCTAGGGGCG
CGTAACCGTA AATTCTTTGT GTTTCCGGGA TCGCCTTTAG CGAAAAAGGG GCCTAAGTGG
ATAATGGCTG CTGAGCTGAC TGAAACCTCA CGTTTATTTG CGCGTTGTTG TGCCAAAATA
GACCCTGAAT GGTTAGAGTC ACTCGCCTCA CATTTAGTGA AAAAGAATTA TCTAGAACCG
CATTTTGAAG CCAAAGCGGC AAGCGTTATA GCACTTGAGA ACCAAGTTCT TTATGGCTTG
ACCATAGTCA ATCGCCGTCG AGTACAATAT GGGCCGATTG ACCCTATAGA AGCTCGAGAT
ATTTTTGTGC GTAGTGCTTT AGCCGAAGGG CAGTTACAAA CGAAAGAAAC GTTTTTTGTT
AATAACCAAA AATTGCTTAA TGACATAGAG TCGCTAGAAC ATAAATCTCG CCGGCGAGAT
ATTTTGGTCG ATGAGCAAGT GTTGGTGGAT TTTTACGAAC CGCTAATACC AGCTGGCATT
TATAATGGAC CACTATTTTT TGCTTGGTGG AAAAAAGCGC GTCAACAAAC GCCTGACTTA
CTCGATTACA GCCAAGCATT ATTAATGCAG CGTAGTGCCG ATCATATATC AGCGCTCGAT
TTTCCAGAAA TATGGCATAA AGGTAATCTC GGCTTAACCG TCAGTTATCA TTTTGAACCG
GGTAGTGTTG ATGACGGCGT ATCTGTGCAT ATTCCTGTTG CACTGATTAA TCAAATTGAT
GACAGTGACT TTGATTGGTT AGTGCCTGGG TTGCGACAAG AAAAACTGAT TGCACTGATT
AAATCCTTGC CTAAAAATCT ACGTCGTAAT TTCGTTCCCG CACCAGATTA TGCTCGGGCA
TGCTATCAAG CGATGAAGCC GTTTGAGTTA TCGATGCTTG ATACCATGTG TAAACAGTTA
CTGCGCATGA GCGGTGTACG CATTTCTGCT GATGATTTTG ATGTAACTCA ACTGACAGAA
CATCTTAAGA TGAACTTTAA GATTGAGGAT GACCATGGTC GCTTAGTCGC CCAAGGTCGT
GATTTAGAGC TGTTAAAAGG TCAACTGCAA GGTGTTGTTG CTAAAGCAAT ACGTAAAGTG
GCAGACAAAG GCATTGAGCA AGAGGCAATA ACCACATGGT CATTTGGCGA TTTACCCGCT
CAATATCAGC AGCGCAAAGG TAATTACGAA GTTAAAGCGT ATCCGGCATT AATTGATAAT
AAAACCGATG TGGCGATTAA GTTATTTGAT GATGAACATG AAGCAAAACG TCATCATCGA
GTAGGGTTGC GCCGATTACT GTTGATTAAC ATACCTTCGC CAGTGAAACA TTTACAACAA
GCTTTGCCTA ATAAAGCAAA GCTAGCGATG TACTTTAATC CATTTGGACA AGTGCAGATA
TTAATTGAAG ATATTATTAA TGCAGCGGTA CAGCAGTTGT TAGATCAAAA GCAACTAGAT
ATTCGTAACG AGCAGCAGTT CGAACAAGCA AAAGAGTGGG TTCGCCAAGA GCTCAACCCA
ACAGCAGAGA ATATTGCGCT AAATGTAGAA CAAATTTTGA CAATTTATCA ACGTATTAAA
AAACGTCTTA AAGGCAAAAT TAGTTTAGAT ATTGCATTTG CAATGAGTGA TATTCAAACT
CAGCTTGATA GTCTTGTTTA TAAAGGATTT GTCGAAGACT GTGGCTGGCA ACGGTTAACG
GATGTTGTTC GTTATTTAAA AGCCATTGAA AATAGACTCG ATAAGCTACC TGTTGACCCT
ACACGCGATC GATTACACAT GCATAGTATT GCAAAAGTAC AAGAGGCGTT AACGGCTCAG
TTAGCGAAAG TGCCACGTTC ACAACCGGTC CCAGAAGCAC TAATTGAAGC TCGCTGGATG
ATAGAAGAGT ACCGAGTATC TTGTTTTGCT CAGGTATTAG GTACCGCTTA TCCTATTTCA
GAAAAGCGAG TATTGAGTTC TATCAGTCAA GTGTAA
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| Protein sequence | MNSDLHPLSK AYLNLCYQTD AAKIRRRLYR VNKEAESEKK SQTLAQLTEA AQQAYQKAQQ
RLQSRPIISY PDELPVSQKR DDIASAIANN QVVIVAGETG SGKTTQLPKI CLELGLGTRG
LIGHTQPRRL AARSVANRIA DELNSPLGEV VGFKVRFADA MSDNSYIKLM TDGILLAELT
SDRFLNQYDA IIIDEAHERS LNIDFILGYL KQVLKKRPDL KVIITSATID VDRFSKHFNN
APVIEVSGRT FEVETRYRPL VRDTDADLDV SDGIFAAVEE LMAAGPGDIL IFMNGEREIR
DTADLLNKQQ YRDTEVLPLY ARLSYGEQSK VFKSHIGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVG PGICIRLYDE MDFIQRPEFT
DPEILRTNLA SVILHMLAIG LGDIGGFPFI QPPDQKHIRD GFLLLEELQA VKKSGHDLVL
TPLGKDLAKI PLDPRLARMV IEANKLGCLH EALVITAGLS IQDPRERPAE KKQAADECHR
RYADKDSDFA SWVKLWDHVK DQKHELSASQ FRKQCRDEYL AYLRVREWQD LYTQVKQAVH
ELKWRINDSA ASYEQLHRAL LSGLLSHVGF KGENNEYLGA RNRKFFVFPG SPLAKKGPKW
IMAAELTETS RLFARCCAKI DPEWLESLAS HLVKKNYLEP HFEAKAASVI ALENQVLYGL
TIVNRRRVQY GPIDPIEARD IFVRSALAEG QLQTKETFFV NNQKLLNDIE SLEHKSRRRD
ILVDEQVLVD FYEPLIPAGI YNGPLFFAWW KKARQQTPDL LDYSQALLMQ RSADHISALD
FPEIWHKGNL GLTVSYHFEP GSVDDGVSVH IPVALINQID DSDFDWLVPG LRQEKLIALI
KSLPKNLRRN FVPAPDYARA CYQAMKPFEL SMLDTMCKQL LRMSGVRISA DDFDVTQLTE
HLKMNFKIED DHGRLVAQGR DLELLKGQLQ GVVAKAIRKV ADKGIEQEAI TTWSFGDLPA
QYQQRKGNYE VKAYPALIDN KTDVAIKLFD DEHEAKRHHR VGLRRLLLIN IPSPVKHLQQ
ALPNKAKLAM YFNPFGQVQI LIEDIINAAV QQLLDQKQLD IRNEQQFEQA KEWVRQELNP
TAENIALNVE QILTIYQRIK KRLKGKISLD IAFAMSDIQT QLDSLVYKGF VEDCGWQRLT
DVVRYLKAIE NRLDKLPVDP TRDRLHMHSI AKVQEALTAQ LAKVPRSQPV PEALIEARWM
IEEYRVSCFA QVLGTAYPIS EKRVLSSISQ V
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