| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1440 |
|---|
| Symbol | |
|---|
| ID | 4277257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1716541 |
|---|
| End bp | 1717962 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134215 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_750130 |
|---|
| Protein GI | 114562617 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGAA AACTGAAACT GTCTGTAAAT GTTTGCATAA TAAGCATATT GCTTTTGTGT
ATGTCGCCAT TTGTCTTGGC CAACACTGAA GCTCAATATG AAAATTTAAC TCAACACCTG
CAATTACAGT ATTTGGCTGA GCCCACCGCA CAGCGGGCAC AATATTTAGC GATATTACAG
ATGGGGTCCG CTGCCGAGCA ATTAGAATAT ATCGACAACA TTCAACAGAG TGTGGCTGCT
TTTTGGCATA ATAAACAAGT TTCTCTGCCA TTTGATTCAA TGGATAACAC CACTTCGCTA
CGTGACAAAA ATATTGCACT GGAGCCTAGC GTGGATGATT ACCTGGGGGT GATAAACGAT
CTGCGTAAGT TAATGTGGTT ATCACAAACG CAAGATTGGC CAGCCATCAC GCTTGAAGGG
CTGTTACGCC CTGGAGATCG TCATCCCAGC ATTAAGCAAA TTAATCAACG TTTGTGGTTA
TTGGGTGATG CATACGAATA CCTTGAGGAT GAAATAGATT ATCAACCAGC TTTGGTGCAA
AGCGTTAAAC GCTTTCAGTC TCGGCATGGG TTAAAGACTG ATGCCGTTAT TGGCCCTAAA
ACCTTATTCT GGTTAAATCA AACACCACAA CAACGAGCCT CTTTATTAGC AAAAAGCTTC
GTAGAAAAAA CGGTCTATTT GAGCCAACTG CCTCAACCTT ATTTGTTGAT TAATATTCCC
GCTTTTCAAA TGGTGCTAGT GGACCAAAAT CAAGTTGTGT TAGCGTCTAA AGTGATTGTA
GGTAAGTCAT ATCGACAGAC GCCGGTGATG ACGGGACAAA TTTCCAATAT AGTTATCAAT
CCCACATGGA CGGTACCTCG ACAACTTTTA CGTAAGGATA TTTTACCGCA AGTTAGGTCA
AATGGGGCTT ACTTTGCCGA TAGACATTTT GATGTGTTTG ATTATGAAGG TCATCGTGTT
GATAAAACAC CTCAACAATG GCAACAGGCT GCAACAGGTA AGTTCCCTTA TAGAGTGGTT
CAGCGCCCCG GTAGCGGTAA TGCATTAGGC CGCTATAAAT TTCATTTTAA CAATGACCAG
AGCGTGTATT TGCATGATAC GCCAACCCCC GAAATGTTCG CACATGTGGA GCGGGATATA
TCATCAGGCT GTGTACGAAT TGAAAAGGTG CAACAGTTAG CCGATTGGTT TGCTAACCAT
TTGGTTATCG ACAAGCGTAC TTGGGCCCAT TTGCAGTCTA ATCACACTCA AACTCAATGG
TTTGCCTTAT CGTCATCTTT ACCTGTGCAC ATGGTGTATT GGCGCGCTTG GGTGGATGAA
CAACATGTTG CGCAGTACCG AGATGACATT TATCAATTAA CCCCTGCAGA GTCGATGAAG
TTATTAAGCC ATAAAGCCAT CAATAACGAT ATTGTGCAAT AA
|
|---|
| Protein sequence | MFRKLKLSVN VCIISILLLC MSPFVLANTE AQYENLTQHL QLQYLAEPTA QRAQYLAILQ
MGSAAEQLEY IDNIQQSVAA FWHNKQVSLP FDSMDNTTSL RDKNIALEPS VDDYLGVIND
LRKLMWLSQT QDWPAITLEG LLRPGDRHPS IKQINQRLWL LGDAYEYLED EIDYQPALVQ
SVKRFQSRHG LKTDAVIGPK TLFWLNQTPQ QRASLLAKSF VEKTVYLSQL PQPYLLINIP
AFQMVLVDQN QVVLASKVIV GKSYRQTPVM TGQISNIVIN PTWTVPRQLL RKDILPQVRS
NGAYFADRHF DVFDYEGHRV DKTPQQWQQA ATGKFPYRVV QRPGSGNALG RYKFHFNNDQ
SVYLHDTPTP EMFAHVERDI SSGCVRIEKV QQLADWFANH LVIDKRTWAH LQSNHTQTQW
FALSSSLPVH MVYWRAWVDE QHVAQYRDDI YQLTPAESMK LLSHKAINND IVQ
|
|---|
| |