| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1437 |
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| Symbol | |
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| ID | 4277254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1713690 |
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| End bp | 1714562 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638134211 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_750127 |
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| Protein GI | 114562614 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.204063 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG
GAGGCATGGA TTGCTGCAGG CCGAGTTAGT GTTGACGGTG AAATTTCTGG CTTAGGTGAT
CGTGTCGAGG CTGATGCCAA AATACGTATT GATGGCCGTG CTGTTTCATT AAAATCAGCT
GACGATATTA TTTGTCGTGT GCTGGCATAT CATAAACCTG AAGGTGAAAT TTGTTCGCGC
AAAGATCCTG AAGGCCGTAC TACCGTGTTT GAACGTCTAC CTAAAGTGCG CGATGCTCGC
TGGGTTGCGG TAGGACGTTT AGATATTAAT ACTTCAGGGT TGTTGTTATT TACCTGTGAT
GGTGAATTAG CTAACCGTTT AATGCATCCG TCAAATGAAG TAGAGCGTGA ATATGCAGTG
CGTACTTTTG GTGAAGTGCC AGAAGCAGCT GTACAGCGTT TACGTACCGG CGTGACTTTG
GAAGATGGTC CAGCACAGTT TGATACCATT AAAGCCGCTG GTGGCGAAGG CATAAACCAA
TGGTGGCATG TCACCCTTCG CGAAGGGCGT AATCGTGAAG TACGTCGTTT GTGGGAATCA
CAAGACGTAC AGGTCAGCCG TTTAATCCGC GTACGTTATG GCAAGGTTGA GTTACCAAAA
ACCTTACCGC GTGGTGGTTG GATTGAGTTG CCGATGGATC AAGTTAACTA TTTACGTCAA
CTTGCTGGCT TAGAAGCTGA AACACGCTCT GTTTTAGGAT CGGACAAACA CAGTGTTGCT
CGTTCTAAAG TTAAAAGTGC TAAAATCCGC CGTGCAGTTC ATAAGCATAA AGTGGTTGGA
AATCATGGCA AACCAACACG TCAGCGTAGC TAA
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| Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS VDGEISGLGD RVEADAKIRI DGRAVSLKSA
DDIICRVLAY HKPEGEICSR KDPEGRTTVF ERLPKVRDAR WVAVGRLDIN TSGLLLFTCD
GELANRLMHP SNEVEREYAV RTFGEVPEAA VQRLRTGVTL EDGPAQFDTI KAAGGEGINQ
WWHVTLREGR NREVRRLWES QDVQVSRLIR VRYGKVELPK TLPRGGWIEL PMDQVNYLRQ
LAGLEAETRS VLGSDKHSVA RSKVKSAKIR RAVHKHKVVG NHGKPTRQRS
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