| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1435 |
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| Symbol | |
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| ID | 4277252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1709270 |
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| End bp | 1710349 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134209 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_750125 |
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| Protein GI | 114562612 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACATC GCTCAACATT GCCGTTGGCA CTGCTTATTT CTCTTATTTT AGTCGGTTGT
ACGCCTGTTG AAAGCGCTGT ACAAGAAGTG CTTGTGCGCC CAGTAAAATT GTTTGAAGTG
GCACAGTCGT CAGGCAATAC CATTCGTCAG TTTCCTGCAA GAGTCGAAGC CAATAGCCGT
GCAGAATTAT CATTTAGGAT TTCAGGCCAA CTTGTCAGAT TGGATCTCGT TGAAGGCCAA
CACGTTAAAC AAGGTGTTTT ACTGGCTCAA TTAGATGATC GCGATGCGCG TAATAATTTA
ATGACTCGAG AGGCCGAGTA TGACTTGTTG CTCGCAGACT TTAGCCGTAA TCAAACTCTT
TTAGAACGTA AATTGATTTC ACAAGCGTTA TTTGACAGCA GTAAAGCCCA ACTTAAATCG
GCCAAAGCAG CGTTAGCCGC TGCCAATGAC CAAGTTAGTT ATACCCGTTT AGAAGCGCCG
TTTAACGGCA CCATTGCAAA ACGTTTGGTG GATAACCACC AAATTGTTCA ACCAAATCAA
GGTGTGATGA CTCTGCAAAA TAATCAGTTA CTTGATGTCA GCATTCAAGT CCCAGAAGCA
ATGGCAGCAG TATTAACTCA AGATATTGCC AACGGTTTAG CCGCAAAAGT ACGTTTTAGT
GCACTAAATG ACATGGTGTT TGATGCAAAA TTTAAAGAAT ACTCAACTCA AGTGACACCA
GGCACACAAG CTTACGAAGT GGTGTTTTCA TTACCACAAC CTGACAATGT ACAGCTATTG
CCAGGCATGA GTGCCGAGTT AACTTTAGCG ACACTCAATG ACTCGAAACA GAGTTTTAGG
ACTATTGTTC CTATTTCTGC CGTAGACAAA CAAGACCAAA ATGGTGATGT AACCGTATGG
CGTTATCAGC CAGATAGCGG AGATGTTAGC CCGGTAAAAG TGACTCTCGG GCGGGTGAGT
ACTGACGGCG TCGAAGTGTT AACTGGGCTC CAAAAAGGCG ATGCTATTGT TGCAGCAGGA
TTATCGCAAT TATCTGAAGG CATGAAAGTA AAACCTTTAC GCTGGCAACG AGGAGTGTAA
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| Protein sequence | MKHRSTLPLA LLISLILVGC TPVESAVQEV LVRPVKLFEV AQSSGNTIRQ FPARVEANSR
AELSFRISGQ LVRLDLVEGQ HVKQGVLLAQ LDDRDARNNL MTREAEYDLL LADFSRNQTL
LERKLISQAL FDSSKAQLKS AKAALAAAND QVSYTRLEAP FNGTIAKRLV DNHQIVQPNQ
GVMTLQNNQL LDVSIQVPEA MAAVLTQDIA NGLAAKVRFS ALNDMVFDAK FKEYSTQVTP
GTQAYEVVFS LPQPDNVQLL PGMSAELTLA TLNDSKQSFR TIVPISAVDK QDQNGDVTVW
RYQPDSGDVS PVKVTLGRVS TDGVEVLTGL QKGDAIVAAG LSQLSEGMKV KPLRWQRGV
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