| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1424 |
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| Symbol | trpA |
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| ID | 4277922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1697930 |
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| End bp | 1698733 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638134198 |
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| Product | tryptophan synthase subunit alpha |
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| Protein accession | YP_750114 |
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| Protein GI | 114562601 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0159] Tryptophan synthase alpha chain |
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| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAACC GTTATCAAGC AAAATTTGCT GCACTAAAAG CACAAAATAA AGGTGCATTT
GTTCCTTTTG TGACCATTGG CGATCCGAGC CCTGAATTAT CATTAAAAAT TATCCGGACC
TTAGTCGATA ATGGTGCTGA CGCCCTTGAG TTAGGCTTTC CTTTTTCAGA TCCATTAGCC
GATGGCCCCG TTATACAAGG TGCTAACTTA CGGTCATTAG CGGCAGGTAC AACTTCTAGT
GATTGTTTTG ACATCATCAC TAAAGTCCGC GCTCAACACC CTGATATGCC TATCGGGTTA
TTGCTTTATG CCAACCTAGT TTTTGCTAAT GGTATTGATG AGTTTTACGC TAAAGCTCAA
GCTGCTGGTG TGGATTCAGT GTTGATTGCT GACGTGCCTG TTGAGGAGTC TGCTCCCTTT
AGTAAAGCCG CCAAAGCACA TGGTATTGCA CCCATCTTTA TTGCACCGCC CAATGCTGAT
GCTGACACCT TAAAAATGGT CAGTGAACAA GGTGAAGGTT ACACCTATTT GCTATCACGA
GCTGGCGTCA CGGGTACAGA ATCCAAAGCT GGCGAGCCAA TTGAAAACAT TCTGGCACAA
CTCGCCGAGT TTAATGCGCC GCCACCACTA TTAGGTTTTG GTATTGCCGA GCCTGAGCAA
GTACGAGCAG CCATCAAGGC GGGCGCTGCA GGTGCTATTT CAGGTTCTGC AGTGGTTAAA
ATCATTGAAG CACATCAACT TGATGAAACC ACATTACTGG CGAAACTGGC TGAATTTACC
GCTGCAATGA AAGCGGCGAC ATAA
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| Protein sequence | MSNRYQAKFA ALKAQNKGAF VPFVTIGDPS PELSLKIIRT LVDNGADALE LGFPFSDPLA
DGPVIQGANL RSLAAGTTSS DCFDIITKVR AQHPDMPIGL LLYANLVFAN GIDEFYAKAQ
AAGVDSVLIA DVPVEESAPF SKAAKAHGIA PIFIAPPNAD ADTLKMVSEQ GEGYTYLLSR
AGVTGTESKA GEPIENILAQ LAEFNAPPPL LGFGIAEPEQ VRAAIKAGAA GAISGSAVVK
IIEAHQLDET TLLAKLAEFT AAMKAAT
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