| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1418 |
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| Symbol | |
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| ID | 4277916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1691244 |
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| End bp | 1693577 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134192 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_750108 |
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| Protein GI | 114562595 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTATTTT TTAATCGGCT GCAAACACGG ATTTTTGCTT TTTTTGTATT ATTAATCATT
ACCGTATTGA GTTTGTCTTT TTGGTTAACA TACCAAGCTA ATCAAAGGTT AGAGCAACAG
TATGTGGCCA ATCAACTTGA AGTAGCGAGC TTAGTTTTCG AGTCGCAATA CGATAACCGA
AACTATTATT TGGCAGCATT TGCCGCGACG GCCGCAAAGG ACTTTGGCTT AAAAGATATT
TTTATTGATG GTGATAACCG TAGTTTTCTG GTGGCATTAA ATAATCATCG CAGTCGGATT
AATGCATCTT TAGCCATGGC TGTGTCTGCC GAAGGTAACG TTATTGGCCA GCTGGTGGCC
TCGCAAGGTG AATTAGGTCG TGAAGCCGTT GTTTTGGGCT CTGAACAGAA TGAAGTGTTT
CGATACAAGT TAGGTTCCGA GTTTGAAACA CTGAGCCCAT TTTATTTATT AGATAATAAA
CTGTATCAAA TTAAGTTTTC ACCACTCACT AGTGGCGGTA ATAGCGTTAT CGGTTGGGTG
GGTTTTGGGT TTCTTATCGA TGATACCTTA GCTAATTCGT TGCAGAAGCT CACTGGCTTA
AACAGCGGTT TTATGTTAAC AACCGAAAAT AATGTCATTG CGGTTGGCCA TTCTGGTCTG
TCGTTGCCAG ACGATGAAAC CTCACTATTA TCGCGTTATA TCATCGAAGA GAAAACCAAC
CACGATTATA TTCTGTGGAA GCAATTTTTA GGTGAAGTTG ATGGCCAGTC TTTACATGCC
TATATGTATA AATCCCGCTC TGATTTGTTG GCTTCAATAG AATCACAGTG GTTACAACAG
GTCGCGGTGT TAGTTATGAT GTTACCGGTG TCATTGTTGT TGGCGTTTTG GATATCGGGC
AGTATCACTC GGCCGATCAC ACAATTAATA GCCCAAGCAC GTTTTATCGC ACAAGGTAAT
TATGACTCCA GTGTGAGTGT CGATTCCAGT ATTGAGCTAC AACAATTAGC CACTGAATTT
ACCTCAATGC AGCAAGCTAT TTTACAACGA GAAAAAGCCA TTGCTCATCA AGCTTATCAT
GACCCATTAA CCAATTTAGG TAATCGTAAT GAATTACAGC GCACGATTGA ACCTTGGTTA
GTCGCGGGGT CAACGATGGG GCTGTGTTTA ATTAATATTC GCCGCATGAC TGAAATTAAT
GTCACGTTAG GTCATGCTGT AGGCGATGAG GTGATTAAAG AAGTGGCTAA GCGTTTATGT
GAGGTAAATC CCGATGCCTT AGCTTATCGA TTGTCGGGTG ATGAATTCGT TTTAGCATTT
AAACATTGTG AGCACCAATC GTTTGATGTG CTTCTCAAAA AGCTCCAAAA TCAAATTGGT
CAGGATTATC GTTATCAAGA TGTAATGTTA CATTTGCAGT TTACTGCTGG TGTCAGTTTT
TATCAGCCAA ACGTAGATAT TGTTACCCTG CTAAGACAAG CAGATACCGC TCTGCAGCAT
GCTAAAATAA ATAAGCGTGA CTATCAAATC TACGACGCCA ATATCGATAA AAATAGTATT
GAACGTTTTC AGCTCATTAA TGAACTTAAA GTGGCTATCG AGCAAAATCA GTTAGTGTTG
TATTACCAAC CCAAATTAAA CTTAGCTAAA CAAAAAATTA CCCATGTAGA GGCACTCGTT
CGTTGGAATC ATCCTGCTAG AGGCATTATT CCACCTGATA CGTTTATCCC TATCGCCGAG
AAAACCATGC AAATGGATGC ATTAACTCGT TGGGTGATTA CTGAAGCGAT GGATCAATAT
CATCGTTGGC AATTACTGGG TATTAATATG TGTATAGCGG TAAATATTTC GGCTGAAAAT
TTAAAAGATG AACAATTTTG TCACTGGGTT ATTAATGCTC TCGCTGAGCA TAATGTTCCG
GTTGCGGCGA TGACATTAGA AATAACTGAA GATGCGGTAG TGTCAGATCC TGAACTTGCG
GTAAAGCAGC TTACCTTACT GCGTAAAAAT GGACTGACGT TATCAATAGA TGACTATGGC
ACAGGCTATT CTTCATTGGC GCAATTGAAA CAACTGCCAG TCGATGAACT TAAAATTGAT
AAGTCATTTG TGCAAAAGTT GCTGGAAAAT GAAGCTGACC AAATTATAGT GCAATCGACG
CTACAATTAG CTCATAATTT GGGCCTTAAA GTGGTTGCCG AAGGCATAGA AGACAAGGCT
ACTTTAGAAT GGTTAACCAA ACTTAATTGT GAAATGGGCC AAGGCTTTTA CTTGTCGCGT
CCATTGCCTG AGCAGCAGTT TAATGACTGG TTAGGGCAAT CTGATTACCT GTAG
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| Protein sequence | MLFFNRLQTR IFAFFVLLII TVLSLSFWLT YQANQRLEQQ YVANQLEVAS LVFESQYDNR
NYYLAAFAAT AAKDFGLKDI FIDGDNRSFL VALNNHRSRI NASLAMAVSA EGNVIGQLVA
SQGELGREAV VLGSEQNEVF RYKLGSEFET LSPFYLLDNK LYQIKFSPLT SGGNSVIGWV
GFGFLIDDTL ANSLQKLTGL NSGFMLTTEN NVIAVGHSGL SLPDDETSLL SRYIIEEKTN
HDYILWKQFL GEVDGQSLHA YMYKSRSDLL ASIESQWLQQ VAVLVMMLPV SLLLAFWISG
SITRPITQLI AQARFIAQGN YDSSVSVDSS IELQQLATEF TSMQQAILQR EKAIAHQAYH
DPLTNLGNRN ELQRTIEPWL VAGSTMGLCL INIRRMTEIN VTLGHAVGDE VIKEVAKRLC
EVNPDALAYR LSGDEFVLAF KHCEHQSFDV LLKKLQNQIG QDYRYQDVML HLQFTAGVSF
YQPNVDIVTL LRQADTALQH AKINKRDYQI YDANIDKNSI ERFQLINELK VAIEQNQLVL
YYQPKLNLAK QKITHVEALV RWNHPARGII PPDTFIPIAE KTMQMDALTR WVITEAMDQY
HRWQLLGINM CIAVNISAEN LKDEQFCHWV INALAEHNVP VAAMTLEITE DAVVSDPELA
VKQLTLLRKN GLTLSIDDYG TGYSSLAQLK QLPVDELKID KSFVQKLLEN EADQIIVQST
LQLAHNLGLK VVAEGIEDKA TLEWLTKLNC EMGQGFYLSR PLPEQQFNDW LGQSDYL
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