| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1395 |
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| Symbol | truA |
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| ID | 4277088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1666350 |
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| End bp | 1667135 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134169 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_750085 |
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| Protein GI | 114562572 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGGGTCG CGTTAGGTAT TGAATATGAT GGTAGTAGTT TTTGTGGGTG GCAGCGCCAA
CTCGAGGTCG ATTCAGTGCA AGCCCAGATT GAGAAAGCGT TAAGTTATGT GGCTAATGAA
CCTATAACCG TATCGTGTGC CGGAAGAACA GATACTGGTG TGCACGGTAC CGGGCAGGTG
GTTCATTTTG ACACAGATGT TCAACGTCCA ATGACGGCGT GGACACAGGG CGTTAATGCT
AATTTACCAG ACAGTGTGGC TATACGCTGG GCAAAAGAAG TCGATGACAG TTTTCATGCT
CGTTACAGTG CTACAGCCAG ACGTTATCGC TATGTGATTT ATAATCATAA ACTGCGCCCT
GGTATTTTAA GTGCAGGTGT AAGCCATTAT CACGGTGATA TTGATGAAAC TTTGATGCAT
AAAGCGGCAC AGCTTTTTGT TGGCGAACAC GATTTTACCA GTTTTAGAGC CTTGCATTGT
CAATCTAAAA CACCGTTTCG AAACGTGCAT CAAGTCAATG TAACTCGCCA AGGTATGTAT
GTGATGGTCG ATATTCAAGC TAATGCATTT TTACATCATA TGGTGCGCAA TATTGTTGGT
TCATTACTGC AAATCGGCTT AGGTAATCAA CCTATAGAGT GGATAACAGA ATTGTTTGCC
CTGAAAAATC GTAAGCTAGC GGCACCTACC GCTAAACCGA ACGGATTGTA TTTGGTCGAC
GTAACTTATC CTGAACATTA TCAATTACCT AAGCTAGCTT TGGGTCCATT GTTTATGCTC
GATTAA
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| Protein sequence | MRVALGIEYD GSSFCGWQRQ LEVDSVQAQI EKALSYVANE PITVSCAGRT DTGVHGTGQV
VHFDTDVQRP MTAWTQGVNA NLPDSVAIRW AKEVDDSFHA RYSATARRYR YVIYNHKLRP
GILSAGVSHY HGDIDETLMH KAAQLFVGEH DFTSFRALHC QSKTPFRNVH QVNVTRQGMY
VMVDIQANAF LHHMVRNIVG SLLQIGLGNQ PIEWITELFA LKNRKLAAPT AKPNGLYLVD
VTYPEHYQLP KLALGPLFML D
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