| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1394 |
|---|
| Symbol | |
|---|
| ID | 4277087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1661995 |
|---|
| End bp | 1666221 |
|---|
| Gene Length | 4227 bp |
|---|
| Protein Length | 1408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134168 |
|---|
| Product | ATPase |
|---|
| Protein accession | YP_750084 |
|---|
| Protein GI | 114562571 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTGC GTACTTCATA TATTGTGGGT TTGATTGCCT GCACAGCCGT TGGCTTAACC
AGTGTACAAA TTATTGAGTC TGCGCATGCA GAAACGCTCA AAATTACTGG CCCCAATGGT
GAGGTTAAAC AACAAGCGAA ACGCCAATAT GGTCCAACAA CATCAAGAGA TACGTTTTGG
AGTATTGCGC AAAAAGTCAG ACCCAGCGAT AAGGTCAGTG TTTACCAAGT GATGGCAGCG
TTGTTTGACG CTAATCCACA TGCTTTTAGT GGTAATAATT ACAATACATT AGAGCGAGGG
ATGATATTAC TTGTTCCTTC TGTTGATGTA ATAGCCGCTA TTCCCAATGA TGTCGCTAAA
CGCCGTGCAG AACAAGATGA CCGCCGTGCT AGCAGACAAA CACAGCCTCG TCCCGTCATT
AATAATAAAC CTATTCAATC TCCTATAGTC GAAACGCCTA AAAAGCCTAC CGTTTCAAAA
CCACTGCAAA TAGTGCAGCA AACACCTGCT GTAGAAGTAC AAACCAAAGC GATTACAGAG
GCCAATGCCG TTGTCGTAAA TGACCTCAAT AGCACCTTAG ATAAAGCCAA TGCAAAAACC
TTGATGCTGA CCGATGAGCT TGCGCGTGCA CAAGATGAAT TAATGGTCAG CAACAATGAC
AATCAAGTGT TGAAAAACAA AATTGAACAA ATGTCATTAA ACATTTCCTC GCTTGAAGAA
GATCTACAAC TATTACGCGA GAAATATGAA GGCTTAAGTT TAGAAAATAA AAAACTTGTA
GATCAAACTG AAAATGTGGA ACCCGTTGTA GAAGAACCCA CTGACTTTTG GCGCAGCCTA
ATGGATAACA CCATTTTGTT GATCATTGCT GCATCGATTC CTCTGTTAAT TATATTCGGA
CTTATTTTCT GGTTACTTAG TCGCCGTAAT AAAAAAAATC AGCAGTCTGA AGTAAAAACA
GCAACCCAGT CTGAACAAGA GTCTGCAGCT GCAACAGACC GCGATGACTT AGATGACTCT
GATGATATTG TGGTCCATTT AGATTCAAAC GATGAAGAGT CAATTGATGA TTTATTGGAT
TTAGACAGCG TAGATTTACA GCCTGAAATC CAAATGGAAG GTGATGCCGA AATGGATATG
GCATCAGATA TGTTTGTTAG TGAAACAGAA ACAGAAATAG AAGATGAGGA AGGGACCTCA
TTAGATGATT TATGGGCAGA GGCGATGGAA GATCAAGATT CTGATCTTGA ACCTCTTGAA
GATGACGATG ATCTCGACAG TCTACTGGCT GGATTAGATG ACAAGCCAGC TGCAACCCTA
AATTCTGCTG CACCAGAAGA TGATTTAGAC AGTTTGTTGG CGGGTTTAGA TGAAGATACA
GAAAAAGATG ATCTAGATGC TTCAGCAGAA AATGATATTG ACTCGCTATT AGCTGAGTTT
GATATGCCAG CAGAGCCGGA TAATGTTGCC GCTGAAGAAT CGGTAAAATC AGCTGAAACA
AGCGCGGATG ATGATATCGA CTCACTATTG GCTGAATTTG ACATGCCAGC TGAATCGGAC
GATGTTGCCG CCGAAGAACC GGTGAAATCA GCTGAAACAA GTGCGGAAGA TGATATTGAT
GCATTGTTGG CTGAGTTTGA TATGCCAGCA GAGCCGGATG ATGTTGTCGC TGAAGAATCG
GTAAAATCAG CTGAAACAAG CGCGGATGAT GATATCGATG CATTGTTGGC TGAGTTTGAT
ATGCCAGCAG AGCCAGATGT TGCCACTGAA GAACCGGTAA AGTCAACTGA AACAAAGGCC
GATGATGATA TCGATGCACT GTTAGCTGAG TTTGATATGC CAGCAGAGCC AGATGTTGCT
GCCGTTGAAG AACCGCAAAT ATCAGCTGAA ACAAAGGCAG ATGATGATAT CGATGCATTG
TTGGCTGAGT TTGATATGCC AGCAGAGCCG GATGATGTTG CCGTTGAAGA ACCGCAAATA
TCAGCTGAAA CAAAGGCAGA TGATGATATC GATGCATTGT TGGCTGAGTT TGATATGCCA
GTAGAGCCGG ATGATGTTGC CGTTGAAGAA CCGCAAACAT CAGCTGAAAC AAAGGCAGAT
GATGATATCG ATGCATTGTT GGCTGAGTTT GATATGCCAG CAGAGCCAGA TGTTGCTGCC
GTTGAAGAAC CGCAAACACC AGCTGAAACA AAGGCAGATG ATGATATTGA TGCATTGTTG
GCTGAGTTTG ATATGCCAGT AGAGCCGGAT GATGTTGCCG GTGAAGAACC GCAAATATCA
GCTGAAACAA AGGCAGATGA CGATATCGAT GCATTGTTGG CTGAGTTTGA TATGCCAGCA
GAGCCAGATG TTGCCTGTGA AGAACCGCAA ATATCAGCTG AAACAAAGGC AGATGACGAT
ATCGATGCAT TGTTGGCTGA GTTTGATATG CCAGCAGAGT CGGACGATGT TGCCGCTGAA
GAGCCGATAA AATCAGCTGA AACAAACGCG GAAGATGATC TTGATTCATT ACTATCAAAA
TCTGATTCAG AACAAACTGA TGTTGATGCT CCTACTGCAG CGGACGAAGA TATAGATGAA
CTCCTAGCTG GCTTGTCTGT GACCAAGGAT GAGAACGAAC AAGATAGTTC AGAAGATGAT
GGGGATACTG AACCTCAGCC ACTAAACAGT GATTCAGTTG ATAACGATGA TGATATTGCC
GCGTTAATTG CAGCTGAGTT ACAAGATGAT GTTAACGAAG ATATCCCAGA CGTAGAGTCT
AGTGACGATG ACATTGATGC ATTGTTGTCT AGCTTGAATG AGCCTGTTAT TGAATCAGTA
TTTGACGAAG AAAGTGATGA ATTATCTACA GTAGAACAAG CATCTTCCGA TAGTGATGAT
TTAGCGGCGC AAATTGCAGC TGAGTTAAGC GATGATGAAG ATGTCGCTGA CTCTATTGAT
GATAATGAAA CCAGTGACGA TGACATCGAT GCATTATTAG CGAGTCTTAA CGAGCCGGTG
GTTGAGTCAG ATGCTGATGT TCAGGAAAAA GCGGCTGTCC AAGCACAGAT TGCAGCTGAA
TTAGATGATG ATATGTCTAG CGAAGAATCT ACATCTGATG ATGAGTCACT CGATGATGAT
ATTAATACCT TATTGGCAAG CTTTAAAGAC GATATAAAAG ACGACGCTCC GTTGATTGGC
GAGACTGAAA ATATTGACTC TGACAGCACT CAAATTGACG GCTCTCAATC TGATAATGAA
AGTATCGACG ATAATGCATT GTTTGATGAG TTTGATGAAT ATCTTAATGA TACCGATTTA
GTCAACACAG ATGATGTCGC AGATATTGAA ACGACCCCGT TTATTGAGCC TGAAACCGAT
GCTGATAAAG CTGCAAACAG CGATGACGAA GATAACAGCT GGTTAGATGC TGAACTTGAA
GCCGCGTTAG CATCAACGAG CAATAATGAT GTTGAGTCCG ATCAAGAAAT TGCAGCTATA
CCAACTCCTG TAGCCACGCC TACATCAGAA ACTGATGCCG ATGATGGTTT GGATGCATTA
TTAGCGCAAA TGGACGATGA TGATAAAACT TCATCTACAG CGCAAAATAA AGCCAATAAA
GATTCAGGTT TCTTTAATGA CCTTAAATCA AGCAAACCTA AACCTGAACT TTTAGATTGG
GAAAGCGATT TACTTAAAGC TGCCGAGTCT GCTGCTGACG AGAGAGAAGT CGATGAAGCA
GATGTGAGTG ATGATGATCT ACTGGCGGCA TTTTCACAGT CACTCAAAGA TGATGACAAC
GATGATGACT TTACCTCTGA AGATGAGTAT ATCCTTAGCG ATGACAACTT AACGGTTGAT
GAAGCATTAG CAGCACTCGA TCAAAAAGAA CGAAGCCAAT CAACAGAATA TAAAGCCAGT
GACGATGACT TAATGCGTTT TGAGCGTGAA AACGGTTATA TCGACATTGA TAAACTGTTG
AACGATGCTG ATGAAGATGA CGATAAAACC GACCAGTATA AAGACGTCAA TGTTGATATG
GGCTCTGTTA ATTCGTTAAT CGGCAACCCG AACATGATCG ATGTTGATGA TGAAGAAAAC
TCCGTTAATG CAAAACTTGA TTTAGCCAGG GCGTATATTG AAATTGAAGA CCAAGACAGT
GCCCGAGCGT TATTAAAAGA AGTGCAAATG GACGGTAATG AACGTCAACA ATTAGAAGCA
AAAAATTTAC TGAAAAGTGT TAATTAA
|
|---|
| Protein sequence | MTLRTSYIVG LIACTAVGLT SVQIIESAHA ETLKITGPNG EVKQQAKRQY GPTTSRDTFW
SIAQKVRPSD KVSVYQVMAA LFDANPHAFS GNNYNTLERG MILLVPSVDV IAAIPNDVAK
RRAEQDDRRA SRQTQPRPVI NNKPIQSPIV ETPKKPTVSK PLQIVQQTPA VEVQTKAITE
ANAVVVNDLN STLDKANAKT LMLTDELARA QDELMVSNND NQVLKNKIEQ MSLNISSLEE
DLQLLREKYE GLSLENKKLV DQTENVEPVV EEPTDFWRSL MDNTILLIIA ASIPLLIIFG
LIFWLLSRRN KKNQQSEVKT ATQSEQESAA ATDRDDLDDS DDIVVHLDSN DEESIDDLLD
LDSVDLQPEI QMEGDAEMDM ASDMFVSETE TEIEDEEGTS LDDLWAEAME DQDSDLEPLE
DDDDLDSLLA GLDDKPAATL NSAAPEDDLD SLLAGLDEDT EKDDLDASAE NDIDSLLAEF
DMPAEPDNVA AEESVKSAET SADDDIDSLL AEFDMPAESD DVAAEEPVKS AETSAEDDID
ALLAEFDMPA EPDDVVAEES VKSAETSADD DIDALLAEFD MPAEPDVATE EPVKSTETKA
DDDIDALLAE FDMPAEPDVA AVEEPQISAE TKADDDIDAL LAEFDMPAEP DDVAVEEPQI
SAETKADDDI DALLAEFDMP VEPDDVAVEE PQTSAETKAD DDIDALLAEF DMPAEPDVAA
VEEPQTPAET KADDDIDALL AEFDMPVEPD DVAGEEPQIS AETKADDDID ALLAEFDMPA
EPDVACEEPQ ISAETKADDD IDALLAEFDM PAESDDVAAE EPIKSAETNA EDDLDSLLSK
SDSEQTDVDA PTAADEDIDE LLAGLSVTKD ENEQDSSEDD GDTEPQPLNS DSVDNDDDIA
ALIAAELQDD VNEDIPDVES SDDDIDALLS SLNEPVIESV FDEESDELST VEQASSDSDD
LAAQIAAELS DDEDVADSID DNETSDDDID ALLASLNEPV VESDADVQEK AAVQAQIAAE
LDDDMSSEES TSDDESLDDD INTLLASFKD DIKDDAPLIG ETENIDSDST QIDGSQSDNE
SIDDNALFDE FDEYLNDTDL VNTDDVADIE TTPFIEPETD ADKAANSDDE DNSWLDAELE
AALASTSNND VESDQEIAAI PTPVATPTSE TDADDGLDAL LAQMDDDDKT SSTAQNKANK
DSGFFNDLKS SKPKPELLDW ESDLLKAAES AADEREVDEA DVSDDDLLAA FSQSLKDDDN
DDDFTSEDEY ILSDDNLTVD EALAALDQKE RSQSTEYKAS DDDLMRFERE NGYIDIDKLL
NDADEDDDKT DQYKDVNVDM GSVNSLIGNP NMIDVDDEEN SVNAKLDLAR AYIEIEDQDS
ARALLKEVQM DGNERQQLEA KNLLKSVN
|
|---|
| |