| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1371 |
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| Symbol | |
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| ID | 4276978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1630121 |
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| End bp | 1632211 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134146 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_750062 |
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| Protein GI | 114562549 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTACAA AAGGAATGTC TTTGCGGCTA CAGCTTTATC TGCTGATAGG TTGTTTATCT
TTATTTAGCT TCGGTGCCGC GTTATATAAT AACGTATCGA ACATGCGTGG CTATTTAAAT
GAACAGTTAG CATCTCATGC GCAAGGAGCA GCGCACAGTT TAGGATTATC TATCTCACCT
TATATGGATG AAGAAGGTTT GGTGATTGCC GAGACAATGA CTAATGCTAT TTTTGATTCC
GGCTATTACC AACATATTAT TTTTACCGAT CTTGACGGCA AAGTACTGTT TGAGCGCAAT
AATCCTCAAG GTAATTTTGC TGTTCCTCAG TGGTTTATTA ACTGGTTTAC CCTGCATCCT
CCGGTAATGA CAAGTGAAGT GAGTGATGGT TGGCGTATTG CCGGTAAATT AGAAGTGCAA
TCGCATGCGG GTACCTCATA TAAAAGTTTA TGGGATCACG CCGTTAGCAA TTTAACCTCT
GCATTATTTC AACTTGTTAT TGCACTGTTA TGTGCTTACT TTATTTTAAA AGCGGTGTTA
ACCCCGTTAA GCAGTATTGA AAAACAAGCT GAGTCGGTTA TTCAAAAGCG CTTTGAGCTT
AATCCTATTA AGCCTTTTAC CTCAGAGTTA CGCACATTAG TTAATGCGAT TAATCGCATG
ATTGAGAATA TTCAGCGATC GTTTAACGAG CAAACTAAAT TAGCAGAAGA CTTGTCGCGT
GAAGTTTATA TTGATTCGCA TACTGGATTG CCTAATCGCC GAGCATTATT GAAACAGTTT
GAGTCTATTC AGGCCGAATA TGAAATGCAT GGTAATCGGT TTTATTTAGG TCTGTTGTCG
ATGACCTCTT TAAAGCAGGT GAATGACAAT GATGGTTATG GCAGTGGTGA TGACTATATT
TTATCTGGCG CACAACTTTT TAGTAAACAG ATGAATAGCT TATCTGAGGC GACTTTATAT
CGTATCTCGG GTTCTGAGTT TGCATTTTTA AGCTTACTGA CTGAGGACGC AGCAAAAGAA
ATTGATCAAC AAATAGCGGC CAGTATTTTG ATTGAAAGCT CGTCGCGCTT TAGTAATGGC
TTTGCAAAAC ATAGTCTCAC CCGTGTTAAC TATCAAGAAG ACTTTGCTGA TGTGGTTATG
CGTTTGGATA ACCAGCTAGT GCACAATCAA TATGCTGATA ATCCTAAGGG CTTGGTTTCT
GCTAAAGGAA TGCAAAAGAA TCATTCACGT GAAGAATGGG TTGGTATTTT AACCCAGTTC
ACTCAGTATT TTAAAGACGA AATCAACCAT TCTAATAGCA AAGATTTTGC GATTAAGTGT
ATTCCGTTAG ATAAAATATT CGATCTAATG TTGCAACCTG TAGTGGATGA AAATCAAACC
ATTTTATATG TTGAGTCATT TGTGCGGTTT AAAATAGCCG GCGAAACACT ATCGACTTTA
GATGTGTTTG CCATGGCAGA AAGACTGGGC GTGCTGCAAG ACCTTGAACA AGCTGTTGTG
TGTTTTATTT TTTATAAACT TCAACATATT GAACACACGC GTGTGGCGAT TAATATTAGT
AATCGTGCGC TGCATAATCC GGTATTTACC GATTGGTTAT TTGATTTATA CCAAAAATTG
CATAAATCGC TTCCACCACT TTTGTATGAA TTTAACGAGT CTGGCGCGAT GCTGTCGCTT
GAATCGACAG AGAAGTTTAT TAGCCGATCG AAACAATTGG ACATTGATAT TGCCATTGAA
CGTTTTGGTT CAAGTTTAAG TTCGTTTTGC TATATCAGAA ACTTAAACAT TGATTATATT
AAAATTGATC CTAGTTATGT ACGTGATATT GCTCAAGCTG ATACGCGCTT CTTTGTCCAA
ACGGTGATTC AAATTTGTCA TGGTATTGGT ATTAAAATCA TCGCTCCACA GGTGGAGTCG
GCTGTTATAG GTGAACATTT TTCACTCATG AACATTGATG GTTTACAAGG TAATGGATTG
TATGCTGTAC GAAATTTCAG TACAATCATC CCTGCTAACG CAACAAGTAC ATGGATCAGT
GCATTGCAGC TGAACTACTT TAGTCATTCA CCACTTCACG AGGCAGAATA A
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| Protein sequence | MFTKGMSLRL QLYLLIGCLS LFSFGAALYN NVSNMRGYLN EQLASHAQGA AHSLGLSISP
YMDEEGLVIA ETMTNAIFDS GYYQHIIFTD LDGKVLFERN NPQGNFAVPQ WFINWFTLHP
PVMTSEVSDG WRIAGKLEVQ SHAGTSYKSL WDHAVSNLTS ALFQLVIALL CAYFILKAVL
TPLSSIEKQA ESVIQKRFEL NPIKPFTSEL RTLVNAINRM IENIQRSFNE QTKLAEDLSR
EVYIDSHTGL PNRRALLKQF ESIQAEYEMH GNRFYLGLLS MTSLKQVNDN DGYGSGDDYI
LSGAQLFSKQ MNSLSEATLY RISGSEFAFL SLLTEDAAKE IDQQIAASIL IESSSRFSNG
FAKHSLTRVN YQEDFADVVM RLDNQLVHNQ YADNPKGLVS AKGMQKNHSR EEWVGILTQF
TQYFKDEINH SNSKDFAIKC IPLDKIFDLM LQPVVDENQT ILYVESFVRF KIAGETLSTL
DVFAMAERLG VLQDLEQAVV CFIFYKLQHI EHTRVAINIS NRALHNPVFT DWLFDLYQKL
HKSLPPLLYE FNESGAMLSL ESTEKFISRS KQLDIDIAIE RFGSSLSSFC YIRNLNIDYI
KIDPSYVRDI AQADTRFFVQ TVIQICHGIG IKIIAPQVES AVIGEHFSLM NIDGLQGNGL
YAVRNFSTII PANATSTWIS ALQLNYFSHS PLHEAE
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