Gene Sfri_1369 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1369 
Symbol 
ID4276976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1628128 
End bp1629312 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content46% 
IMG OID638134144 
Productmethionine gamma-lyase 
Protein accessionYP_750060 
Protein GI114562547 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases 
TIGRFAM ID[TIGR01328] methionine gamma-lyase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGATA ATAATCAGGG TAAATGGAAC TTAGCCACAT TAGCCATTCA TGGCGGGCAT 
CAACGCGAAG CCTTTGGCTC ACTCACCACA CCGTTATATC AAACCGCCAC CTTTGTATTT
GATACTGCCG AACAAGGCGG AGCACGTTTT GCAGGCGAAG AGCCGGGTTA TATTTATACT
CGCCTTGGTA ACCCAACCAC CGCAGAACTT GAACGTAAAA TGGCGCTGCT AGAAGGCGCA
GAAGACGCAG CAGCAACTGC ATCTGGTATG GCGGCAGTAT CAAGTGCATT ATTAACTCAT
TTGCATGCAG GCGATCACTT AATCGCATCT AAAGCGGTTT ATGGTTGTAC GTTCGCGCTG
ATGACCACTC AGCTAACCCG CTTAGGCATT ACGAGTACAT TAGTCGACTT CACCGACATG
AACGCAGTAG AGGCGGCCAT CAAGCCAAAC ACCAAAGTGC TGTTCTGCGA AACACCAGTA
AACCCACATT TACAAGTATT CGATCTTACC GCCATGGCCA ACGTCGCCAA AGCGCACAAT
CTAGTATCAA TCGTCGATAA CACCTTTATG ACACCACTAT TGCAGCAACC GTTAGCGTTA
GGCATCGACA TGGTGATCCA CAGTGCGACC AAGTACTTAA ACGGCCATGG TGATGTAATC
GCGGGTATTG TGTGCGGTAA TGCTGAGCAC ATGCACAGAT TAAAATTCGA AATATTAAAA
GACTTTGGTG GCGTGATATC ACCACACGAC GCTTGGTTAA TCTTACGCGG TTTAAAAACC
TTAGACGTAC GCTTAACTCG TCATTGCGAT AACGCAGAAG TGTTAGCTGA ATTTTTAGAT
AAACACCCTA AATTCAGCCA GGTCTTTTAC CCAGGATTGT CGCACCACCA AGGCCATCGC
TTCATTGGTA ATCAAATGAA ACGCGCCGGT GGAGTTATTG CATTTGAACT AAAAGGCGAT
AAACAGGACG CCATCAACTT CGTTAATCGT GTAAAGCTAT TCACTATCGC TGTAAGTTTA
GGTGACGCAG AATCGCTAAT CCAACACCCA GCATCAATGA CCCACTCGCC TTACACACCA
GAAGCACGAT TAGCCGCAGG CATTACCGAC AACCTACTGC GTATCTCGGT TGGATTAGAG
AATGTTCAAG ACTTGATTAC GGATATTGAA CAAGCTTTGC GTTAA
 
Protein sequence
MQDNNQGKWN LATLAIHGGH QREAFGSLTT PLYQTATFVF DTAEQGGARF AGEEPGYIYT 
RLGNPTTAEL ERKMALLEGA EDAAATASGM AAVSSALLTH LHAGDHLIAS KAVYGCTFAL
MTTQLTRLGI TSTLVDFTDM NAVEAAIKPN TKVLFCETPV NPHLQVFDLT AMANVAKAHN
LVSIVDNTFM TPLLQQPLAL GIDMVIHSAT KYLNGHGDVI AGIVCGNAEH MHRLKFEILK
DFGGVISPHD AWLILRGLKT LDVRLTRHCD NAEVLAEFLD KHPKFSQVFY PGLSHHQGHR
FIGNQMKRAG GVIAFELKGD KQDAINFVNR VKLFTIAVSL GDAESLIQHP ASMTHSPYTP
EARLAAGITD NLLRISVGLE NVQDLITDIE QALR