Gene Sfri_1354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1354 
Symbol 
ID4277888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1611310 
End bp1611915 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content40% 
IMG OID638134129 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_750045 
Protein GI114562532 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGTTAG TATTCGCCAT TGCTTTATTT GCTTTTTCTG CCGGAATTAC TCCAGGCCCA 
AACAACATCA TGTTGATGAC CTCAGGTGTG AATTTTGGTA TTAAACGCAG CATTCCTCAT 
CTAATGGGTA TTAGCTTAGG ATTTCCGACC ATGATATTAG CGGTCGGGCT TGGGTTAAGT 
GCAATATTTC AAGCTTATCC TTTCATTCAT ATTGTGATTA AAGTAATTGG AATTAGCTAT 
TTGCTGTATT TATCATGGCT CATCGCTAAT AGCAGCAATA AAATGGAAGG CAAGCAGGTG 
AGTAAACCAT TTACTTTTTT ACAAGCTGCT GCATTTCAAT GGGTTAATCC GAAAGGCTGG 
ATTATGGCTG TTGGTGCCAT AGCAACATTT ACCTCAGTAC AACAAGAACT TAATAGCCAG 
GTGATTACCA TAGCGAGTGT GTTTTTATGT GTCGCCTTTC CCTGTGCGAT TGTCTGGTTA 
GGATTTGGGG TGGCACTAAA ACGGTTACTT AAAAATGAGC GTCAACAACG TATTTTTAAT 
ATCACTATGG CATTATTATT AGTGGCATCG ATCATCCCAA TGATGTTGCC GCCAACAACA 
CACTAA
 
Protein sequence
MELVFAIALF AFSAGITPGP NNIMLMTSGV NFGIKRSIPH LMGISLGFPT MILAVGLGLS 
AIFQAYPFIH IVIKVIGISY LLYLSWLIAN SSNKMEGKQV SKPFTFLQAA AFQWVNPKGW 
IMAVGAIATF TSVQQELNSQ VITIASVFLC VAFPCAIVWL GFGVALKRLL KNERQQRIFN 
ITMALLLVAS IIPMMLPPTT H