Gene Sfri_1319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1319 
Symbol 
ID4277381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1573973 
End bp1575049 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content44% 
IMG OID638134094 
Productglucan endo-1,3-beta-D-glucosidase 
Protein accessionYP_750010 
Protein GI114562497 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATC TCAATAAACA TCATTCATTT GTATCCAGCT TAACCGCGTT AACTTTGTCG 
GTCATAGTTC TGTCTGGCTG TAGTGCTGAT GATGCAACAG AACAAGCAAC AGATACCGTG
ATAACCAATA TCGAAGCTTC AGGTTGGCAA CTGGTTTGGC AAGATGAGTT TGAGGGTAAC
CAAATAGACA CAACCAAGTG GAGCTTTGCT GTTGACTGTT ACGGTGGCGG CAATGATGAG
GCTCAGTGCT ATACCGCACG GTCTAAAAAT GCTGCAGTTA GTGGTGGTCT TTTATCGATT
ACGGCATTAC GAGAAACCTT TTCTGGGCCT GCTGTAAATG ATTCTGATCC AAGCTATGAC
GTAAACGATA CATCGAAAAC ATTAGATTAC ACCTCTGCTC GTTTAGTATC GAAAAACAAA
GGGGATTGGA AATACGGCCG TTTTGAAATT CGCGCAAAAT TACCACAAGG TCAGGGAACT
TGGCCTGCGA TATGGATGTT ACCGACAGAT TGGGTATATG GCCCTTGGGC TGGTTCAGGT
GAAATAGACA TTATGGAGGC CGTAAACCTC AAGGTTGTTA CCGACGGTAA GACGCCAGAG
TCTGCAGTAC ATGGCACATT ACATTACGGT AAACAATGGC CCAATAATGT TTATACAGGG
CAAGGGTATC ATTTACCCAA TGAACTCAAT CCTGCGGATG CCTTTCATGT TTATGCTGTT
GAATGGCAGC AAGATGAAAT TCGTTGGTAT GTTGATGATG TTCACTTTGC CACACAACAA
TCCTCTGGTT GGTACAGTCA ATATATTGAT GGCAATGGTG ATTTGGTTAA TGCTCCTGAT
GATGCACCGT TTAACCAGCC ATTTCATATG CTACTCAATC TTGCCGTAGG TGGAGCATGG
GCTGGAACCG TCAATAACAC AGGTATCGAT GAGTCAGTTT TTCCGCAATC GATGTTAGTG
GATTACGTGC GTGTATATCA ATGTGCTATT TCGCCGAGTT CGGGAGCAGG TTGTGAGACT
ATTGATAATA GTGTTGTACC CGTAACGGGT AAAAAAATGC CTGATATTGT TGAGTGA
 
Protein sequence
MQNLNKHHSF VSSLTALTLS VIVLSGCSAD DATEQATDTV ITNIEASGWQ LVWQDEFEGN 
QIDTTKWSFA VDCYGGGNDE AQCYTARSKN AAVSGGLLSI TALRETFSGP AVNDSDPSYD
VNDTSKTLDY TSARLVSKNK GDWKYGRFEI RAKLPQGQGT WPAIWMLPTD WVYGPWAGSG
EIDIMEAVNL KVVTDGKTPE SAVHGTLHYG KQWPNNVYTG QGYHLPNELN PADAFHVYAV
EWQQDEIRWY VDDVHFATQQ SSGWYSQYID GNGDLVNAPD DAPFNQPFHM LLNLAVGGAW
AGTVNNTGID ESVFPQSMLV DYVRVYQCAI SPSSGAGCET IDNSVVPVTG KKMPDIVE