| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1313 |
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| Symbol | |
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| ID | 4277375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1562246 |
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| End bp | 1565182 |
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| Gene Length | 2937 bp |
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| Protein Length | 978 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134088 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_750004 |
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| Protein GI | 114562491 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.120074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAA GAACATTTAA CAAAACCAAG CTTGCGACCA GTTTATCGCT TGTCCTTGGT
ATGAGCAGTA TCTTACCAGC TCATGCTGCT GATGAAGTCA GTGACGAAAA TATCGAAGTT
ATTTCGGTTA CTGGTATTCG TGGCAGTTTA ATTAAATCAA TGGATGTGAA GCGTTCATCA
AGTGGAGTCG TTGACTCTAT TTCTGCTGAA GATATTGGTA AGTTTCCTGA TACTAACTTA
GCTGAATCGT TACAGCGTAT TACAGGTGTA TCGATTGACC GTTCTAACGG TGAAGGCAGT
AAAGTATCAG TGCGTGGTTT TGGTCCTGAT TACAACTTGA TCACCCTCAA TGGTCGTCAA
ATGCCCGTCA CTACAGGCTC GCGCTCATTT GATTTTGCTA ACATCGCATC TGAAAGTATC
AGCGGTGTAG AAGTTCATAA AACCAGCCAA GCCTCAGATT CTACCGGTGG TATCGGTTCT
ACTATCGATA TTTTAACCCA CAAGCCATTC AGCTCTCCGG GGTTGAAAGC CACTTTTGGT
GTAAAAGCGG TTGATGACCA ATCAACAGAT AATGGCTCAG TAACCCCTGA ATTATCTGGT
TTGTACTCAA ACACGTTTGC AGATGATAAA TTTGGTATTT CACTATCGGC CAGTTACCAA
GAGCGTGAAA GTGGTAACCA ACAAGCACAG GTTGGCACAG GCTGGCGTAG CTTCCCAGGT
TCTGCTGACA ACAGTGATTG GGGCGGAGTG GCTAAAGACA GCACCCAAGT TAATCGTCCT
GGTGATAGCG ATATTTATTC CGTTCCGCAA ACCACTGTTT ATCGTTTTGA AGAACAACAA
CGTACCCGTA CTAACGGCCA GTTAGTATTA CAGTACAGCC CGGTTGATAG TGTAGTCGCA
AGCGTAGACT ATACCTACAT GCGTAACGAC ATCGACACTC AATCGAATGA CGTATCAGCA
TGGTTTAACT TCGTTCCGTC TGAAAACGTA TGGTCTGATG GCCCTATCGC CTCACCACTT
ATTTACTCTG AAACTTATGA TTCACCTGCT GATTTATCTA TGGCTGCTGG TGACTATGGC
GTACGTAACG AAAGTGGTTC TTTAGGTTTT AACCTTGAAT GGCAAGCAAC AGATAACTTA
AAGCTGACAT TTGATGCGCA CAACTCGGTT GCTGAAAACA AACCGAATAA CCTTTATGGT
TCAAACAACA ATTTAAGTAC TGCAGCGTTT GTGCGTACCA GCGCGGCAAC TGACTTTAGC
GGTGACTTAC CTGTACTTGC TGTTGGTGGT GGTAATGCAG TGACACCTGC AGACATGATG
CTTACCGGTT CTGTTTTTGG TAACGCACGT AATAAGTCTG AAATTGATCA ATACCAATTT
GACGGTGAAT ACTTATTTGA AGATGCAGGT AGCATCGACT TTGGTGTAGC GCTAACTAAC
GTTAACAACC ACTCACAAAG CGTCAACGTT CAGCGTAACG ATTGGGGTGG AGTAGGTTCT
GCAGGTGACT TTGAAGATGC ATGGTTCCCA GCTGATACCA TTCATGACAA ATTTGACGCT
AATGGCGGCG ATTTCTCTCT GTCAGACGGT AACTTTGACG TTTTAGATAC CATTTTCATG
TGGGATTTTG CATCAGTACG TGATTTTGCA GCAGCAAACT ATGCTTCTGC AGTAAGCGGT
GATTGTGGTA ATGGCTTCTG CCCTTCTACT AATTATGCAG CTGAAACAGA TCGTTATACT
GAAGAAGAAT CACAAGCCGT TTATGTACAG TACAACTACG ATAATGAAAT TGCCGGCATG
CCATATGATG TGCATTTCGG ACTTCGTTAT GAGCAAACTG ATGTCACCTC GACCGCTGCC
GTTGCAGGAT ATAATGGCGC TGACTGGATT GCTGAAACTG AAATTGCATT AGTGGGTACT
GGTGAGCAAG TATTTGAAAC CAAAACCGGT GATTACGACT ATTTACTACC AAGCTTCAAC
TTTAATATTG AAGTAGTAGA AGATGTCATG CTTCGTGCGG CATACAGTGA AACCATTGGT
CGTCCTAGCT ACACAGATAT TCAAGGCGGT ACGGTATTAG CGACGCTTGC CAATCGAAGT
AATGGTGGTG GTTCTGCAGG TAACCCTACA TTGTTGCCAT TAGAATCAGA AAATATCGAC
TTCTCTGCTG AGTGGTATTA CGCCCCATCA AGCTATGTGT CTGTTGGATA CTTCCGTAAA
GACACTAAAA ACTTTATCAG TTCTGAAACA GTTAAAACCA CTAACGGCAT TTATAACCCA
GCATCTGGTG ATTTATATAA AGCTGCTGTG GCCGCAACGG GTACAACCGA AGCAGGGGCT
GTTCGTGATT ATATTTTCGC AAATTATGCT GATAATGCTG CTGTAGATGT CACGAATCAA
ATTATTAGCG GCAGTGCTGC TAATAATGAT GAATTGTTGA ACTTTAATAT TTCGACGCCA
TCAAACAGCT CTAATAACTC AGTCATTGAT GGTTGGGAGT TTGCGGCACA ACACTTCTTC
GGCGAAAGCG GATTTGGTGT AATAGCCAAC TACACCTTGG TTAATAGTGA TCAGGCTTAC
GACAACTTCT CATTTGATGC ACAATCAGCA TTAATCGGTA TTAGTGACAC CGCTAACGCG
GTATTCGTGT ACGAGAATTA TGGTTTCCAA GCCCGTATCG CATACAACTG GCGTGATGAG
TTCTTAAACT CTACAGGTCA AGGTACTGGC GCTAACCCAC AGTACACAGA AGCTTACTCG
CAAATCGATT TGTCTGTTAG CTATGATGTC GAGTCTGTTG AAGGCTTAAC GGTGTTTTTC
GAAGGACTTA ACATTACTGA AGAGTACATC CGTGTTCACG GTCGTGCTGA CGAGCAAGTG
TTAAACCTAA CCGAAACTGG CGCACGTTAT AGTTTAGGTG CTCGTTATAC TTTCTAA
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| Protein sequence | MKTRTFNKTK LATSLSLVLG MSSILPAHAA DEVSDENIEV ISVTGIRGSL IKSMDVKRSS
SGVVDSISAE DIGKFPDTNL AESLQRITGV SIDRSNGEGS KVSVRGFGPD YNLITLNGRQ
MPVTTGSRSF DFANIASESI SGVEVHKTSQ ASDSTGGIGS TIDILTHKPF SSPGLKATFG
VKAVDDQSTD NGSVTPELSG LYSNTFADDK FGISLSASYQ ERESGNQQAQ VGTGWRSFPG
SADNSDWGGV AKDSTQVNRP GDSDIYSVPQ TTVYRFEEQQ RTRTNGQLVL QYSPVDSVVA
SVDYTYMRND IDTQSNDVSA WFNFVPSENV WSDGPIASPL IYSETYDSPA DLSMAAGDYG
VRNESGSLGF NLEWQATDNL KLTFDAHNSV AENKPNNLYG SNNNLSTAAF VRTSAATDFS
GDLPVLAVGG GNAVTPADMM LTGSVFGNAR NKSEIDQYQF DGEYLFEDAG SIDFGVALTN
VNNHSQSVNV QRNDWGGVGS AGDFEDAWFP ADTIHDKFDA NGGDFSLSDG NFDVLDTIFM
WDFASVRDFA AANYASAVSG DCGNGFCPST NYAAETDRYT EEESQAVYVQ YNYDNEIAGM
PYDVHFGLRY EQTDVTSTAA VAGYNGADWI AETEIALVGT GEQVFETKTG DYDYLLPSFN
FNIEVVEDVM LRAAYSETIG RPSYTDIQGG TVLATLANRS NGGGSAGNPT LLPLESENID
FSAEWYYAPS SYVSVGYFRK DTKNFISSET VKTTNGIYNP ASGDLYKAAV AATGTTEAGA
VRDYIFANYA DNAAVDVTNQ IISGSAANND ELLNFNISTP SNSSNNSVID GWEFAAQHFF
GESGFGVIAN YTLVNSDQAY DNFSFDAQSA LIGISDTANA VFVYENYGFQ ARIAYNWRDE
FLNSTGQGTG ANPQYTEAYS QIDLSVSYDV ESVEGLTVFF EGLNITEEYI RVHGRADEQV
LNLTETGARY SLGARYTF
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