| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1283 |
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| Symbol | lpxB |
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| ID | 4278394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1517165 |
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| End bp | 1518313 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134058 |
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| Product | lipid-A-disaccharide synthase |
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| Protein accession | YP_749974 |
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| Protein GI | 114562461 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0763] Lipid A disaccharide synthetase |
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| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0224286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAACT CTCCTTCAAA AGTATTCGCC ATTGTCGCCG GAGAAATCTC CGGCGATATT
TTAGGTGCCG GTTTAGTTAA TTCACTCAAA AAACGCTATC CTGATGCGCG CTTTATCGGC
ATTGGTGGCC CTCGAATGCA AGCTCTAGGG TTTGAAAGTT TATTTCCAAT GGAAGAACTG
TCGATCATGG GCTTAGTCGA AGTGTTATCA CATTTACCTC GACTGCTGCA TATTCGTTCA
AGCCTAGTGA AACAAATTAC TGAATTAGCG CCAGACTGTT TTATTGGTAT TGATGCGCCC
GATTTTAATA TTGGTGTAGA GCTTAAATTA AAAGCCAAAG GGATTAAAAC AGTCCATTAC
GTCAGCCCGT CAGTATGGGC TTGGCGTCCA AAACGTATAT TTAAAATTGC TAAAGCGACC
AATATGGTGT TGTCGCTATT GCCGTTTGAG AAAGCGTTTT ACGACCAACA TCAAGTGCCT
TGTACTTTTG TTGGGCATAC ACTTGCGGAC GATATTCCGA TGCACAGTGA TAAGCTAGCT
GCTCGGCAAT TATTAGGATT AGATCCTAAT GCTGAATACT TGGCGGTATT GCCTGGTTCC
AGAGGCGGTG AGCTAAAGCA ATTAGCTGAG CCGTTCGTCA AAGCAGCTCA ATTAGTTAAG
CAAACCTTTC CAGACATCAA ATTTGTCACC CCAGTGGTTA ATGATGCTCG TCGACAACAG
TTTCTTGCTG CACTTGAGGA GTTTGCTCCC GATTTAGAAG TCACTATTGT TGAAGGCCAA
TCTCGCGAAG TCATGGCTGC TGCTGATTGT ATTTTATTGG CATCTGGCAC AGCGACTTTA
GAGGCCATGC TGGTTAAACG TCCTATGGTT GTGTCGTATC GGGTCAGCCC AATTACGTAT
GCCATCGCGA TTAAAATGAT GAAAATCAAA AACTATTCGT TGCCTAATTT GCTCGCAAAC
GACACCATTG TGCCAGAATT GATGCAAGCT AATTGCCAGC CACAGTTAAT TGCCGATGCG
ATAATCAAGC AGCTTAATCA AGATTTTGCA CCGCTAAATA CCCGTTTTGA AGAATTACAT
CAATTGCTAA AGTGTAATGC CAGCGAGCGA GCGGCAGATG CTGTAGTAGC ATTATTACAA
ACGCCGTAA
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| Protein sequence | MTNSPSKVFA IVAGEISGDI LGAGLVNSLK KRYPDARFIG IGGPRMQALG FESLFPMEEL
SIMGLVEVLS HLPRLLHIRS SLVKQITELA PDCFIGIDAP DFNIGVELKL KAKGIKTVHY
VSPSVWAWRP KRIFKIAKAT NMVLSLLPFE KAFYDQHQVP CTFVGHTLAD DIPMHSDKLA
ARQLLGLDPN AEYLAVLPGS RGGELKQLAE PFVKAAQLVK QTFPDIKFVT PVVNDARRQQ
FLAALEEFAP DLEVTIVEGQ SREVMAAADC ILLASGTATL EAMLVKRPMV VSYRVSPITY
AIAIKMMKIK NYSLPNLLAN DTIVPELMQA NCQPQLIADA IIKQLNQDFA PLNTRFEELH
QLLKCNASER AADAVVALLQ TP
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