| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1278 |
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| Symbol | |
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| ID | 4278389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1511821 |
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| End bp | 1514304 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134053 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_749969 |
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| Protein GI | 114562456 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00357264 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATTTA ATAAAATTTT TGCCTCGATG TTATTCGTCG GCGCGTCTTT TTCAGGGAAT
GGTTGGGCAG AGTCTTTCCA ACCTTTTGAA GTGACCGACA TCCAAGTAGA AGGTTTGCAA
CGAGTTGCTC TCGGTGCAGC ACTATTGAGT TTACCTGTGA AAGTAGGTGA TACAGTAGAT
GAAGTTAAAT TACAGCAAGC GATTAAGAGC CTTTACGGTT CAACCAATTT TGAAAACATC
AGTGTCAGTC ATGAAGACGG TATACTCTAT GTAACGGTTA AAGAACGTCC AACTATCAGT
ATTATCTCGT TTGACGGTAA TAAAGATATC AAAGACGAGC AGTTACAAGA AAGTCTTGAC
GGTTCTGGTG TTAAAGCTGG CGAATCACTT GATAGAACCA TGTTGTCTGG CATTGAAAAA
GGCCTGCAAG ATTTCTATTA CGGTGTGGGT AAATACGGTG CCAAAGTTGA AGCGCAAATC
ATCAACTTAC CTCGTAACCG TGTTGAGCTT AAATTTAAGT TTACCGAAGG TTTAGCGGCT
GAAATCCGCC AAATTAACGT GGTTGGTAAT ACTGTATTCT CAGATTCTGA GCTCATCAGT
ATGCTTGAGC TTAAAGACTA TGTGGCATGG TGGGATTTGT TTGGTGAGCG TCGCTACCAA
AAGCAAAAGC TACAAGCTGA CTTAGAAACC ATTAAAACCT ATTACCACAA TCAAGGCTAT
ATTCGCTTTG AAGTGACTTC AACACAAGTG GCGATGACAC CAGACCGTAA AGGTTTGTAC
ATCACTATTA ACGTGAATGA AGGTGAAAAG TACAAGGTGA AAGAAGTTAA CTTAATTGGT
GACCTAATGG GCCGAGAAGA GTTAATGAGA TCTATTTTGC CAATTAAAGC GGGCAATATG
TACAACGGTG CGGATGTGAC ATTCACCGAA GAAATGTACA GCAAATACCT TGGCCGCTTT
GGTTATGCTT ATCCTGAAGT AAAAACCTAT CCTGAAATTG ATGATGAAAC CAAAGAAGTG
GTACTCAACA TCAATGTTAA ACCGGGTAAG CGCGTGTATG TTCGCTCAAT TAACTTCACC
GGTAACACAG TTACTAAAGA TGAAGTTATG CGCCGCGAAT TACGCCAAAT GGAAGGTGCA
TGGTTGAATT CTGCTCAAAT TGAACAGTCT AAGCTACGCC TTAACCGTTT AGGTTATTTC
GAAACGGTTG ATGCTGAAAC CATTCAAGTA CCAGGCAGTG ACGATTTAGT TGATGTCGCA
GTAACTGTGA AAGAGCAACC GTCAGGTTCG TTCAACGCAG GTGTCGGTTA TGGTACTGAA
TCTGGTGTGA GCTTACAGTT TGGCGTTGAA CAAAATAACT TCCTTGGTAC TGGTAACCAA
GCTGGTTTTA GTGTCAACAC TAACAAATAC TCAAAAAGTG CCAACTTGTC TTATACCGAC
CCATACTTCA CTAAAGACGG TGTCAGTTTA GGTGGTAGCG TTTACTGGAA TGAGTTTGAT
GCTAATGAGG CTAACCTTGA GCGTTATAAG AATAAATCTT ATGGTGTTGC ATTAAACTCA
GGATTCCCGA TTAACGAATA TAACCGTTTG AACGGTGGTA TTGGTTATCG TCATAATACT
ATTTCAGAAA TCTCTGCTTA TGAACAAGCA TTGCGTTTCT ACAATGTGTA TCGTGAAACG
GATGATCCTA ATTCAGACTT AAGTTTTGAT AACTTTGAAT TGAATGCCGG TTGGTACCGC
AGCACACTTA ACCGTGGTAC GTTCCCGACA GATGGTTCGT CGCAACGTTT AAGCGGTAAA
ATGACCGTGC CAGGTTCTGA CTTACAGTAC TTTAAAACGG ATTTTGACAC CAACTTCTAC
TTCCCACTGA CACCTCAGCA TGGGTTTGTA TTATTGGCTC GCGCCCGTTT AGGTTATTCA
AACGGTTATG GTCAGTTTAA CGACAACGAT CAAATCTTAC CGTTCTGGGA AAACTATTAT
TCTGGTGGTA GCAGTTCGTT ACGTGGCTTT AAGTCTAATT CAGTAGGCCC TCGTTCGTTC
TATTTATACC GTGGTAGTGA GCAATGTGCG CCTGATGTTT CAGGTGATGG TTGTAGTTTG
CCAGGTGACC CAAATACCAT TCAGGTGAGT TCAGGCCGTT CAATTGGTGG TAACGCCATT
GCAACAGCAA GCTTTGAAAT GATTGTTCCG ACACCATTCC TCGATGAAGC TTACACTAAC
TCAGTGCGAA CAAGTTTCTT CGTTGATGCA GGTAACGTAT GGGATACTGA GTTTGATTAT
GACTCATATC GGACTTTACC CGCGGATCAG TTCTCTAAGT TAGAAGACTA TAGCGATCCA
GAGCGCTTAC GTGCCTCATG GGGTATGAGC GTGCAGTGGC TATCGCCAAT GGGGCCTATG
GTATTCAGCT TAGCTTGGCC ACTGAAAGAA TATGAAGATG ACGAGACAGA GATTTTCTCG
TTCAATATTG GCAAAACGTT CTAA
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| Protein sequence | MRFNKIFASM LFVGASFSGN GWAESFQPFE VTDIQVEGLQ RVALGAALLS LPVKVGDTVD
EVKLQQAIKS LYGSTNFENI SVSHEDGILY VTVKERPTIS IISFDGNKDI KDEQLQESLD
GSGVKAGESL DRTMLSGIEK GLQDFYYGVG KYGAKVEAQI INLPRNRVEL KFKFTEGLAA
EIRQINVVGN TVFSDSELIS MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTYYHNQGY
IRFEVTSTQV AMTPDRKGLY ITINVNEGEK YKVKEVNLIG DLMGREELMR SILPIKAGNM
YNGADVTFTE EMYSKYLGRF GYAYPEVKTY PEIDDETKEV VLNINVKPGK RVYVRSINFT
GNTVTKDEVM RRELRQMEGA WLNSAQIEQS KLRLNRLGYF ETVDAETIQV PGSDDLVDVA
VTVKEQPSGS FNAGVGYGTE SGVSLQFGVE QNNFLGTGNQ AGFSVNTNKY SKSANLSYTD
PYFTKDGVSL GGSVYWNEFD ANEANLERYK NKSYGVALNS GFPINEYNRL NGGIGYRHNT
ISEISAYEQA LRFYNVYRET DDPNSDLSFD NFELNAGWYR STLNRGTFPT DGSSQRLSGK
MTVPGSDLQY FKTDFDTNFY FPLTPQHGFV LLARARLGYS NGYGQFNDND QILPFWENYY
SGGSSSLRGF KSNSVGPRSF YLYRGSEQCA PDVSGDGCSL PGDPNTIQVS SGRSIGGNAI
ATASFEMIVP TPFLDEAYTN SVRTSFFVDA GNVWDTEFDY DSYRTLPADQ FSKLEDYSDP
ERLRASWGMS VQWLSPMGPM VFSLAWPLKE YEDDETEIFS FNIGKTF
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