| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1276 |
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| Symbol | |
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| ID | 4278387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1509216 |
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| End bp | 1510406 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134051 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_749967 |
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| Protein GI | 114562454 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.262469 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAATA TGGTGATTTT AGGGGCTACT GGCTCAATAG GCGCTAGCAC CTTAAGTGTG
ATGGTAAATA ACCCTGCCGA TTTTCATGTC TATGGATTAG TGGCCAATGC CAGTGTTCAA
AAAATGCTGG CCTTGTGTAT TACCCATCAG CCTGAGTATG CTCATATGGT GGATGAGAAC
GCCGCTATGG AGCTTAAATC ATTATTACCT AATCACTGCG TTACTCAAGT GACTACAGGT
GCTGAGGCGT TAAATGCGTT AGTGACCGAC AGTCGTACCG ATACCGTTAT GGCGGCTATT
GTTGGCGCTG CGGGTTTAGT ACCGACATTT GACGCTGTTA AAGCAGGTAA GCGGGTGTTG
CTAGCCAACA AAGAAGCACT GGTTATGTCG GGTGAGTTAT TTATGCACAC GGCTAGAGCA
TCAGGTGCGA CAGTGCTACC TGTCGACAGC GAGCACAATG CCATATTTCA ATGTTTACCA
ACCAATGTCC AAGCGCAACT CGGTTATTGT GACTTAAGTG CCAATGGCAT ATCACATATT
TTATTAACAG GTTCTGGTGG ACCGTTTTTA AACACTGATT TAGCCACCTT AAGTGCGATG
ACACCTGCTC AAGCTTGTAA TCACCCTAAT TGGTCCATGG GGCCTAAAAT CTCCGTTGAC
TCAGCCACGA TGATGAATAA AGGCTTAGAG TTTATCGAAG CGCGTTGGCT GTTTAATACG
CAAGCTGAAC AGCTCAAAGT GGTGATCCAT CCTCAAAGCG TGATCCATTC AATGGTGCAA
TACCGTGATG GTTCTGTTAT TGCGCAAATG GGCAACCCCG ATATGCGCAC TCCTATTGCT
CATTGTATGA GCTATCCGCA AAGAATTGGC GCTGGCGTTG AACCTTTGGA TTTTTTCAAA
GTCGGACAGT TAAGCTTTTG TGAACCTGAC TTTGATCGTT TTCCATGTTT ACGCTTAGCG
ATGCAAGCGT GTGAGCAAGG GCAAGAAGCG ACCACAGTAT TGAATGCAGC TAATGAAATT
GCTGTCGATT CATTTTTAAA AGGCCGAATT CGTTTTACTG ATATTGCTAA CGTTAATTAT
CGTTGTTTAG ACTCGGTGCA ACAAACACGT TTAGACAGTA TTGAAGATAT ATTACAGCTT
GATGAGCAAG CACGTGCCAC GGCAGTGTCC GTTATCAGCA CACTAAATTA A
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| Protein sequence | MQNMVILGAT GSIGASTLSV MVNNPADFHV YGLVANASVQ KMLALCITHQ PEYAHMVDEN
AAMELKSLLP NHCVTQVTTG AEALNALVTD SRTDTVMAAI VGAAGLVPTF DAVKAGKRVL
LANKEALVMS GELFMHTARA SGATVLPVDS EHNAIFQCLP TNVQAQLGYC DLSANGISHI
LLTGSGGPFL NTDLATLSAM TPAQACNHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT
QAEQLKVVIH PQSVIHSMVQ YRDGSVIAQM GNPDMRTPIA HCMSYPQRIG AGVEPLDFFK
VGQLSFCEPD FDRFPCLRLA MQACEQGQEA TTVLNAANEI AVDSFLKGRI RFTDIANVNY
RCLDSVQQTR LDSIEDILQL DEQARATAVS VISTLN
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