| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1264 |
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| Symbol | |
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| ID | 4277396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1494897 |
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| End bp | 1496375 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134039 |
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| Product | PTS system, glucose-like IIB subunint |
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| Protein accession | YP_749955 |
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| Protein GI | 114562442 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
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| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0238082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAGCC AGTTGGCACA ACGCCGTCAC ATCGGTAAAC GCAGCGTAAG TTTTTTTACG
CAACAATGGT TTAAATTCGC ACAGCGCCTA AGTCAGGCTC TGCTCATACC TATTGCTATT
TTGCCTGCTG CAGGGGTGAT GTTAGGGTTA ACCGTTAACC CGTTACCATT TATTCCTGCA
GAATTAAATA CGGTGTTTTC TGCGGTCGGC AATCTAGTTT TTACCATGAT GCCTTTGTTG
TTTAGTGTTG CGATAGCGAT TGGTTTTTGT CGTGATCAAG GCATTGCAGC ATTTTCAGCC
GTCTTTGGTT TTGGAGTGTT TTTATCCACA ATGGGAGCTC TGACCAATAT TTATGGTCTG
GTATCTCGTC CTCTCTGGGG CATGCAAACA ATTGACACTG GTATCGCTGG CGGCATGTTA
GTCGGCGCGA TGACATGTTT AGCTGTCAAT CTTAGTCAAC ATGTTAAATT ACCTGCTATT
TTTTCCTTTT TTGAAGGACG TCGCAGTGCT CCAATAATTA CCATTCCGCT GTCTATGGCA
CTTGCTTACC TATTGGTGCA TGTTTGGCCG CCCTTATCGC ATATTATTGA ACTCCTTTCT
GATTGGGCTG TATACCAAGA CCCCGCTATT GCTTTTGGTG TTTATGGCAC GGTCGAACGT
TTATTAATTC CGTTAGGATT ACATCACATT TGGAATGCCC CATTTTATCT TGAAGTCGGA
CAGTACATTA ACCAGGGGAC TGTAGTTCGA GGTGAAGTGG CTCGTTATTT GGCCGGCGAT
CCATTGGCGG GAAATCTTGC TGGTGGTTAT TTGATTAAAA TGTGGGGTTT ACCTGCAGCT
GCCTTAGCGA TTTGGCGTTG TGCAGATAAG TCTGAACGTA ACCGAGTTGC GGGGATTATG
TTATCAGCGG CGACAGCCAG TTGGTTAACC GGGGTGACAG AGCCGATAGA ATTTGCCTTT
ATGTTTATCG CACCGATTCT GTTTATTGTA CATGCATTAC TCACGGGAAT TGCTTATAGC
GTGTGTATTC TACTCGACGT TCATCACAGC ATTGTGTTCT CTCATGGGTT GGTAGATTTT
ACCTTATTGT TTTCGCGCTC TGCTAATACT CAGTGGATTT GGATATTGGG TCCGCTCACA
GCAATAATCT ATTATGCAAT TTTTAGGGCC AGTATTTTAG CGTTCAATCT AAAAACGCCT
GGCCGATTAG AGCAAAGTGA TTTACCCGCT GAGCCTAAAG AGAGCTTACG GGCAATGATT
TCTGCATTGG GCGGCCGCGA GAATATTGTC GAGATTAATG CTTGTTTAAC ACGCTTACGT
ATTAGTGTTA ATCAAGCAAA TCTGATCGAT AAAGCTAGAT TAATGCGCTT AGGTGCTAAA
GGCGTGGTTG TTATGGGTAA AGGTGTACAA GTTGTTTATG GCACTAAGGC TGAAACATTA
CGTAAATTAC TGCAAAAATA TTTAGATTCT CGGCGTTAG
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| Protein sequence | MDSQLAQRRH IGKRSVSFFT QQWFKFAQRL SQALLIPIAI LPAAGVMLGL TVNPLPFIPA
ELNTVFSAVG NLVFTMMPLL FSVAIAIGFC RDQGIAAFSA VFGFGVFLST MGALTNIYGL
VSRPLWGMQT IDTGIAGGML VGAMTCLAVN LSQHVKLPAI FSFFEGRRSA PIITIPLSMA
LAYLLVHVWP PLSHIIELLS DWAVYQDPAI AFGVYGTVER LLIPLGLHHI WNAPFYLEVG
QYINQGTVVR GEVARYLAGD PLAGNLAGGY LIKMWGLPAA ALAIWRCADK SERNRVAGIM
LSAATASWLT GVTEPIEFAF MFIAPILFIV HALLTGIAYS VCILLDVHHS IVFSHGLVDF
TLLFSRSANT QWIWILGPLT AIIYYAIFRA SILAFNLKTP GRLEQSDLPA EPKESLRAMI
SALGGRENIV EINACLTRLR ISVNQANLID KARLMRLGAK GVVVMGKGVQ VVYGTKAETL
RKLLQKYLDS RR
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