| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1247 |
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| Symbol | |
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| ID | 4277362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1478449 |
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| End bp | 1479405 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134022 |
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| Product | transcriptional regulator, LysR family protein |
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| Protein accession | YP_749938 |
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| Protein GI | 114562425 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTGATG AAATAACCAA TAAGCTAGGT CAGCAAGTCT ATAACAAACT GCCCATGCTG
GATTTAAACT TATTGCGGGT ATTCTGTACT GTGTGTCAGC ATTCGTCTAT CACTCGTGCG
GCAGAGCAGT TAGGGTTAAC GCAGTCATCG GTCAGTAATG CGATTAACCG TCTTAAGCAT
GCTCTGGAAT GTGAATTGTT TATTCGTATC GGTCGCGGTA TTGAGCCAAC AGCCATCGGA
ACTCATATTT TTAATACTGT ACAACCTATG CTTGATACCA TTGAACAAAC GTTAATGGGG
ATTAAAGCGT TCGATCCTAG TACCTCTAAA CGGGTGTTTA CCATTTATGC TAATGAAGCT
GTTATCGATT TGTTACAACC ACAGTTAGAT AACGCATTAG CGCATTTGTC TGTCAGGGTG
GTGCTACGCA ACTCACCTGT TTTTGAGGCT GAGCAGTTTC AAGATTTGCA AATGCAAAAA
GTGGATTTGG TCATCGATAT CGTGCCACCA AAACTGAAAA TGTTTAGTTG CCAAAAAGTT
GCACAAGAAC GAATCGTCTG TGTGGTGCGC CAAGGCCATC CGGTGATAAA AAACCATCTA
AGTCGAGACG ACTATTTTGC CGCCGAACAC GTTATGTATC GATTTCATCG CGACAATATG
CGTGTGGCGG ACATTATTGC TAACGCACCT TTGCCACAAC GAACTTTATA CAGTGAGCAG
TCATCTTTAT TAAGTATGCT GTCGTTGATC AGCAAGTCTA ACGCGATTGG TATTGCCCCT
TATATTTTCA CCCAAAACTA CGCTGAGTTG TTTAAACTGA CGTTACTTGA ACTACCTTTT
GAAACTCGTC CAATCGATTT GTACAGCATT TGGCCAACTA AGCACGCGTT AGACAAGTCG
TGTATTTGGT TAAGGAAAAC CATCGTTGAG TTAATAGAAA AGGCTTATAA CCTCTAA
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| Protein sequence | MGDEITNKLG QQVYNKLPML DLNLLRVFCT VCQHSSITRA AEQLGLTQSS VSNAINRLKH
ALECELFIRI GRGIEPTAIG THIFNTVQPM LDTIEQTLMG IKAFDPSTSK RVFTIYANEA
VIDLLQPQLD NALAHLSVRV VLRNSPVFEA EQFQDLQMQK VDLVIDIVPP KLKMFSCQKV
AQERIVCVVR QGHPVIKNHL SRDDYFAAEH VMYRFHRDNM RVADIIANAP LPQRTLYSEQ
SSLLSMLSLI SKSNAIGIAP YIFTQNYAEL FKLTLLELPF ETRPIDLYSI WPTKHALDKS
CIWLRKTIVE LIEKAYNL
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