Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1221 |
Symbol | |
ID | 4278471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1439246 |
End bp | 1447108 |
Gene Length | 7863 bp |
Protein Length | 2620 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638133996 |
Product | beta-ketoacyl synthase |
Protein accession | YP_749912 |
Protein GI | 114562399 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3321] Polyketide synthase modules and related proteins |
TIGRFAM ID | [TIGR00517] acyl carrier protein [TIGR02813] polyketide-type polyunsaturated fatty acid synthase PfaA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCCAAT CCAGTAATAA AGATAAGCGT TTAAACAAAC GCTTAAAAGA CATGCCTATC GCGATTGTCG GCATGGCAAG TATTTTTGCT AACTCACGTT ACCTAAACAA GTTTTGGGAT TTAATCAGCG AAAAAATTGA TGCGATTATC GACGTTCCAG AAAGCCATTG GAATGCTGAA GATTACTACA ATGCCGATAA ATCAATGGCC GATAAAAGCT ACTGTAAGCG CGGTGGTTTT TTACCGGAAG TCGATTTCAA TCCAATGGAA TTTGGCCTGC CACCTAATAT CCTCGAACTA ACAGACACCT CACAACTATT ATCGTTAGTG GTCGCCAAAG AAGTGCTGGC AGATGCAGGT ATTGATGCAC AGTACGATAC CGATCGCATC GGTATTACAT TAGGTGTCGG CGGTGGTCAA AAAATCAATC ATAGCCTCAG CGGTCGCTTA CAGTACCCAA TACTCAAAAA AGTATTTAAA AATAGTGGTC TAAGTGATGA AGACACTGAG ATGTTGATCA AAAAGTTTCA GGATCAATAT ATTCACTGGG AAGAAAACTC ATTTCCAGGT TCACTCGGCA ATGTAATTGC AGGGCGTATC GCTAACCGCT TTGATCTAGG CGGCATGAAT TGCGTGGTTG ACGCAGCTTG TGCCGGTTCT TTAGCGGCAA TGCGCATGGC GATTACAGAA TTAGTTGAAG GCCGCAGTGA CATGATGATC ACCGGTGGTG TGTGTACCGA TAACTCGCCA TCTATGTACA TGAGCTTTTC AAAAACACCG GCATTTACCA CCAACGACAC CATTCAACCT TTTGACATTG ATTCAAAAGG CATGATGATA GGTGAAGGTA TTGGCATGAT GGCGCTTAAA CGTCTTGATG ATGCCGAACG TGATGGTGAC CGAATTTATG CTGTTATTAA AGGTATTGGC TCATCATCAG ATGGTAAGTT TAAAAGTATT TATGCACCGC GCCCTGAAGG CCAAGCTAAA GCATTAAGAC GCGCTTATGA TGATGCAGGT TTTGCGCCGC AAACTGTTGG CTTAATTGAA GCCCATGGTA CTGGTACTGC AGCAGGTGAT GTTGCGGAGT TCAATGGCCT AAAGTCGGTG TTTGCAGACG GTAATGACAC TCAACAGCAT ATTGCTCTTG GGTCTGTTAA ATCGCAAGTT GGCCACACTA AATCAACCGC AGGAACCGCT GGTGTGATTA AAGCGGCTCT GGCTTTGCAT CATAAAGTGT TGCCACCGAC CATTAACGTC AGTAAACCGA ATCCCAATTT AAACATTCAA GATTCGCCAT TTTATTTAAA CACCGAAACC CGCCCTTGGT TACCTCGTGC AGACAATACG CCGCGCCGCG CGGGTATTAG TGCATTTGGT TTTGGTGGCA CCAACTTCCA CATTGTGTTG GAAGAATATC GCCAAGAACA TGTTCGAGGC GATAAGTATC GTCAACGCTC AGTACCACAA AGTCTATTGA TCCATGCTGA AAATAAAGCT GCATTACAGG CTCAATTAAC CGCCCTGCAA ACTGAAATTA AGGCTGTTGA TACCACACAG CAAAATCGCC AAGAAATTGT ATTAGCCGAT TTTGGTAAAC GTTTTGCCTT AAATACCATC GCCCCTAATG CGGCACGTAT AGGCTTAGTG GTTGCTTCAT TAGCAGACTT AACCATTCAG CTGACTCAGG CGCTTGCGCA GTTAAGCTCA AATACTGCCG ACAGCTGGCA ATTGCCTTCT GGTACCAGTT ATCGCGCAGC AGCATTGATT CATCCTGAAG CGGCAAGCCA TAAAGTGGCA GCACTATTTG CTGGGCAAGG GGCACAATAT CTGAACATGG GCGCCGATTT AGCCTGTTTG TATCCAGAAA TGCGTCAACA ACTGATGCAA GCAGACAAGG TGTTTGCGCA ACATAAACAA ACGCCACTAT CGCAAATTAT GTACCCAAAC CCTGCTTTTG AAGCCGAAGA TATTGCCGCA CAACAGGCAG CATTAACCAA TACAGCCAAT GCCCAGAGTG CTATTGGCGC GGTCAGCATG GGCCAATATG CATTATTGAC TCAAGCAGGT TTTAAAGCCG ATATGGTTGC TGGCCATAGT TTTGGTGAAC TGTCAGCATT ATGTGCTGCA GGCGTCATTA GCCAAGCTGA TTATTACCAA TTGGCCTTCG CTCGTGGCCA AGCAATGGCG GCAACACCTA AAGATCAAGA CGCTGGCGTA ATGTACGCCA TTATTGTCCC AGCTCAATCT GTTGACAACG GAGTTGAAAA GCTTGAACAG TGCATTAGTG CATTTGAAGG CGTCAAGGTG GCTAATTACA ATGCACCAAC CCAACTGGTT ATTGCAGGCC CAACAGCGTC ATGTACCTTA GCGGCACAAG CTATCACCAC CGAACTTGGT TTTAAAGCAA TAGCCCTGCC GGTTTCTGGT GCGTTCCACA CTCCATTAGT GGCACATGCG CAGCAGCCGT TTGCTGCGGC AATCAATAAG ATTAAATTTG CTAAGCCAAA ACTAAGCCTT TATGCCAATG GCACAGGTAA AGCACATCCT AACGATGCTA AAGCAATCCA AGCAGTATTT AGTGAACATA TGTTGCAATC GGTTCGTTTT AGCGAGCAAC TAAATGCCAT GTATGATGCT GGTGCTCGTG TATTTGTTGA GTTTGGTCCT AAGAATATCC TCCACAAGTT GGTTGAAGCG ACCCTAGGCA ACAAAGCAGA GTCAGTAAGT GTAGTGAGCT TGAACCCAAA TCCTAAAGGC AATAGTGACA CTCAACTACG CCAAGCGGCT TGTCAGCTTG CAGTATTAGG TGTTGCATTA ACCGAGGTTG ATCCATATCA AGCGCCTATC GCTGAGCTTG CAAAAGTGTC ACCGATGAAC GTTAAGTTAA CCGCGAGTAA TTATATTAGT CCCGCCACTC AAGCCAAAAT GCAAAAATCA TTGCAAACTG GCACCGTTAC CAGCCAGACA GTGGAAGTGC CTGTCGAAAA AGTTGTGGAA AAGATTGTGG AAAAAGAAGT CATTAAAACT GAATATATTG AAGTGCCTGC AGCACAAGCT CAAGCCTCTG CAGTCGCCGC ACCTTTAGCG GCAACGACTC CTGTAGCTAA AGCTCAACCG GTTAGCTTAA GTGTACCAGC GTCGGCCGAT AGTATCGGTG CATTTTTTGC TGCGCAGCAA CAAACAGCTG AATTACATCA GCAGTTTTTA GCCATACCAC AGCAATATGG CGACACCTTT GCTCACCTGA TGACAGCCCA AGCACAAATG GCGTCATCGG GATTAGCCAT TCCAGAAAGC TTGCAACGTT CGATGGAGAT GTTCCACCAG CATCAAGCAC AAACATTGCA AAGTCATACC CAATTTTTAA CGCAGCAAGC ACAAGCAAAC CAAGCCGCAT TAGCCATGTT GCAAGGGCAA ACGGTAACAC CTTCAATACA AGCAACAGTA TCTGTACCTG CTCCATCAGT ACAGCCTGCA TTTGTGCAGC CAAGCCAAGT TGCTCAAGCC ACAACGACAC CTTCACCTGT CGTAGCTCCT GTTGCTCAGG TTCAAACAAC TCAAGCGGTT CAATCACAAC CAACAGCCAG TAAACCTGTC CAGGCTCCTG TCGCTCAGCA AGTTAGCTCA GCAGCGGTTT CTGCACCAAC AGCCGGACTA ACACAGCAAC AAGTGTTAGA CACTATGCTC AATGTAGTTG CTGACAAAAC TGGTTACCCA ACAGAAATGC TTGAACTTGG CATGGACATG GAAGCAGACC TTGGTATCGA CTCAATCAAG CGGGTCGAAA TCTTAGGCAC AGTACAAGAT GAGCTTCCAG GCTTACCAGA ACTGAGCCCA GAAGATCTAG CCGAGTGTCG CACCTTGGGC GAAATCGTTA GCTACATGCA AACCAAATTA CCAGCGGCCA ACTCGGTTGC TGCAGCGTCA ACGGGATCAA CATCGGTAGT TACTGCAGCA CCAGCATCAA CAGGCTTAAC GGCTGAAAAC GTCCAACGTA CCATGTTAGC TGTGGTTGCC GATAAAACCG GTTACCCAAC TGAAATGCTT GAACTGGGCA TGGACATGGA AGCAGACCTT GGTATCGACT CCATCAAGCG TGTGGAAATT TTAGGCACAG TACAAGATGA GCTTCCAGGT TTACCTGAAC TGAGCCCAGA AGATTTAGCT GAGTGTCGCA CCTTGGGTGA AATCGTTAGC TACATGCAAA CTAAACTGCC TGCTGCCAGC ACAGTGGCTG CAGCACCAAT TGCATCTGCA GCGCCAGCAA CAGGCTTAAG TGCAGAAAGC GTTCAGCGTA CTATGTTAGC TGTGGTTGCC GATAAAACCG GTTACCCAAC TGAAATGCTT GAACTGGGCA TGGACATGGA AGCCGACCTT GGTATCGACT CAATTAAACG CGTTGAAATT CTCGGCACAG TGCAAGACGA GCTCCCTGGT TTGCCTGAAC TGAATCCAGA AGATTTAGCC GAGTGTCGCA CCTTAGGCGA AATCGTCAGC TACATGCAAA CTAAATTACC TGCTGTCAGC ACATTGGCTC CAGTAGCAAT TGTATCTGCA CCTGCAACTT CGGGCTTGAG TGCTGATACA GTATTAAGCA CCATGATGTC AGTAGTAGCC GACAAAACCG GTTACCCTGC TGAAATGCTT GAACTGAGCA TGGACATGGA AGCCGACCTT GGTATCGATT CAATCAAACG TGTTGAAATT CTAGGCACAG TGCAAGACGA ACTACCAGGT TTACCTGAGC TGAACCCAGA AGATTTAGCC GAGTGTCGTA CCTTGGGCGA AATAGTTAGC TACATGCAAA CCAAATTGCC TGCAACCAAC ACTGAGGCCC CAGTATCTGC TCCAGCAACA CCAGGATTAA GTGCTGATAC CGTTTTAAGC ACCATGATGT CAGTGGTAGC CGACAAAACA GGTTACCCTG CAGAAATGCT TGAACTGAGC ATGGACATGG AAGCCGATTT AGGTATCGAC TCAATCAAAC GCGTCGAGAT TTTAGGTACT GTGCAAGATG AGCTTCCAGG CTTACCTGAG TTGAACCCAG AAGATTTAGC CGAATGTCGC ACCCTAGGTG AAATCGTTTG TTACATGCAA ACCAAATTGC CTGCAGCAAA CGCGATTGCG CCGGTCGCAC CAACATCAAC TGCAAACAAG GTTGACGTTA ACACCGCAGC ATTACCTCCA CACAGCGAGG TAGCGCTAAA AAAGTTACCA GCGGCGGATA AACTCGTAGA TTGCTTTTCA ACAGACTCTT GTATTGTCAT CACAGACGAT GGCCACAGTG CAGGTTTACT AGCAGAAAAG CTAAATGCAA AGGGATTAAC CGTCGCCGTT ATTCGTAACC CACAAACCAT TACCGTGGCA CATTCACCCT TAAGCAGTGA TATTAAAAGC TACACGTTGA GCAGCATTGA TGATGCCCAA ATTGCACAAG TGATTGCCGA TATTAAGGCC GACTTGGGCG CTGAACATGC CATTGCGGGC TTTATTCATT TACAGCCGCA AGCTACCGCT AACAGCAGCG AATTAATGTC GTGCACTGTT GCAGCAAAAG CCGCTGTCGA CAACGCGTTT TTGTGGGCTA AGCATCTTCA CGCTGAGTTT GCAAAACCAG CTCAAGCTTC GCGTTTATGC TACTTTACCG TGAGCCGTTT AGACGGTGGA TTTGGTTATC TTGATAATAC TCAGCTCGCA ACAGCTGAGC TTAACCAAGC AGCCTTATCT GGTCTGAGTA AAACCCTAAG CCATGAATGG CCACAGGTGT TTTGCCGCGC ATTAGACATT GCCAACAATA TTGATACTAC AAGCTTTGCC GATGCCATCG TTGCTGAGTT ATTTGATATC GATGGTGCCA ATGCTAGCGC GGATCGCATT AATGAAGTGG GGATCAGTAA TCAAGGTCGA GTCACTTTAG TTGCCGAAAA TGCCAGCGAG CAGTTTGCAC CAGCAAGCCT AAACAAAAGT GACACTATTT TGGTCACCGG CGGCGCAAAA GGCGTAACGT TTGAATGCGC CCTCACCTTA GCCAAACAAT GCCAATCACA TTTTGTGTTA GCGGGTCGTA GCCAACATTT TGGCAAAGAC TTACCAGCTT GGGCACAAGG CAAAAAAGCC TCTGAGTTAA AAGCCGCAGC CATCGCTTAT ATTCAATCTC AAGGCAATAA ACCAACGCCA AAACAGATTG ATGCACTCGT ATGGCCAATA AGCAGCAGCC TAGAAATAGA TGCTGCGTTA AACGCATTCA GCAAGGTTGG TGCCAGTGCT CAATATGTCT CGATGGATGT CAGCAATGCC ACCGCGGTAG CTGCCAGCCT TAATAGCCTG ACTAATACCA AGGGCGACTC ATTAACCATT AATGGGATTA TTCACGGTGC TGGCGTGTTA GCCGATAAGC ACATTCAAGA TAAAACCTTG GATGAACTTA ACCGCGTATA CCACACCAAA GTGACTGGGC TTGCTAGCAT TATTAATGCA CTCGACCCAC AGCAGATTAA GCTTATTGCA CTGTTTTCAT CGGCGGCCGG TTTTTACGGT AATACCGGAC AGAGTGATTA CGCTATGTCG AATGAAATCC TCAATAAAAC CGCACTGAAA CTAGCGCACA CTTTACCGCA AGCTAAAGTG ATGAGTTTTA ATTGGGGCCC TTGGGATGGC GGTATGGTCA GTTCAGCATT AAAGAAAATG TTTGTTGAAC GTGGCGTTTA CGTTATTCCA CTACAAGCAG GTGCCGAGTT ATTTGCCCAC AGTTTATTAA GCCAACAAGG GGCACAACTG CTTATTGGCT CTGATATGCA AGGTTCATCA GAGCAGGACA ACGCTGTAAA AAAGCTTAAT GCGGACGCTT TGCTTATTGC TAAGGGTTCG CTGACATTTG CTACTAATAC ACTTGTGACT AAAGCATTTA CGGCTAACGC AGTTACGACT GAGGCAGTTA CGACTAAGTC ATCGGCTACT GATATTATCA GTCAGACGGT GACACGAGTA TTAACCCCAG CTGAAATGCC TTTTGTTAGC GATCATTGTA TTGCTGGCAA TCCGGTATTA CCCACGGTAT GCGCCATGCA ATGGATGCGT GATGCGGCAG AAACGTTATG TCATGTGCCT GTCAGTATTG CTGAATACAA ATTGCTTAAA GGGGTTATTT TTGACACCAA TGAGCCACAT TTGTTGCAAC TGGCACTAAC GCAAACTGAC GCGGGGATCA GCGCGCTGAT CTCCTCTCGT TTGTTAAGCG ATCCAAGCGC CGCCATGAAA CCGCAATACC AAGCTCAATT GGTGATCAAT AAGGCGATAT TGGCAGCTGA TGTTGCTAAA CCGATTATTG GCGACAACAG TTTGGCTCAA TGGGCCAACA TGACGCCATT GTATTCAGGC GCTGAACTGT ACCAAAACGG AACCTTATTT CATGGCCCAC GTTTGCAAGG CATTGCTCAA GTGTTGGCAT TTGATGATGC TCAGCTACTG TGCCGAGTGC AATTGCCGCA GATTAATGCC ACAGACTGCC AAGGTTTTAT CCCGTCATCG GTATTAGGTG GTAGCCAAAT TTTCGCTGAA GATTTGCTAC TACAAGCCAT GCTGGTATGG GCAAGACTGA AATACGATGC TGCAAGTTTA CCGTCAACAA CCGGTGAGTG TGTTACTGCT TGGCCATTGG CAAATGGTGA TAAAGGTTAT ATTCAACTTG ATGTAGTTAA GCACAGCGGC AGAATGCTCG TGGCTAACGT GAGTTTATAT CATCAAGACG GCCGCCTGAG TTGCCAAATG CTCAATGCTA AAGTAACCAT TAGTAAGAGT TTGAATGGGG CATTTATTCC ACATCAAGCT TCTGCAGAAC TATCACACAA GGACACCGTG TGA
|
Protein sequence | MSQSSNKDKR LNKRLKDMPI AIVGMASIFA NSRYLNKFWD LISEKIDAII DVPESHWNAE DYYNADKSMA DKSYCKRGGF LPEVDFNPME FGLPPNILEL TDTSQLLSLV VAKEVLADAG IDAQYDTDRI GITLGVGGGQ KINHSLSGRL QYPILKKVFK NSGLSDEDTE MLIKKFQDQY IHWEENSFPG SLGNVIAGRI ANRFDLGGMN CVVDAACAGS LAAMRMAITE LVEGRSDMMI TGGVCTDNSP SMYMSFSKTP AFTTNDTIQP FDIDSKGMMI GEGIGMMALK RLDDAERDGD RIYAVIKGIG SSSDGKFKSI YAPRPEGQAK ALRRAYDDAG FAPQTVGLIE AHGTGTAAGD VAEFNGLKSV FADGNDTQQH IALGSVKSQV GHTKSTAGTA GVIKAALALH HKVLPPTINV SKPNPNLNIQ DSPFYLNTET RPWLPRADNT PRRAGISAFG FGGTNFHIVL EEYRQEHVRG DKYRQRSVPQ SLLIHAENKA ALQAQLTALQ TEIKAVDTTQ QNRQEIVLAD FGKRFALNTI APNAARIGLV VASLADLTIQ LTQALAQLSS NTADSWQLPS GTSYRAAALI HPEAASHKVA ALFAGQGAQY LNMGADLACL YPEMRQQLMQ ADKVFAQHKQ TPLSQIMYPN PAFEAEDIAA QQAALTNTAN AQSAIGAVSM GQYALLTQAG FKADMVAGHS FGELSALCAA GVISQADYYQ LAFARGQAMA ATPKDQDAGV MYAIIVPAQS VDNGVEKLEQ CISAFEGVKV ANYNAPTQLV IAGPTASCTL AAQAITTELG FKAIALPVSG AFHTPLVAHA QQPFAAAINK IKFAKPKLSL YANGTGKAHP NDAKAIQAVF SEHMLQSVRF SEQLNAMYDA GARVFVEFGP KNILHKLVEA TLGNKAESVS VVSLNPNPKG NSDTQLRQAA CQLAVLGVAL TEVDPYQAPI AELAKVSPMN VKLTASNYIS PATQAKMQKS LQTGTVTSQT VEVPVEKVVE KIVEKEVIKT EYIEVPAAQA QASAVAAPLA ATTPVAKAQP VSLSVPASAD SIGAFFAAQQ QTAELHQQFL AIPQQYGDTF AHLMTAQAQM ASSGLAIPES LQRSMEMFHQ HQAQTLQSHT QFLTQQAQAN QAALAMLQGQ TVTPSIQATV SVPAPSVQPA FVQPSQVAQA TTTPSPVVAP VAQVQTTQAV QSQPTASKPV QAPVAQQVSS AAVSAPTAGL TQQQVLDTML NVVADKTGYP TEMLELGMDM EADLGIDSIK RVEILGTVQD ELPGLPELSP EDLAECRTLG EIVSYMQTKL PAANSVAAAS TGSTSVVTAA PASTGLTAEN VQRTMLAVVA DKTGYPTEML ELGMDMEADL GIDSIKRVEI LGTVQDELPG LPELSPEDLA ECRTLGEIVS YMQTKLPAAS TVAAAPIASA APATGLSAES VQRTMLAVVA DKTGYPTEML ELGMDMEADL GIDSIKRVEI LGTVQDELPG LPELNPEDLA ECRTLGEIVS YMQTKLPAVS TLAPVAIVSA PATSGLSADT VLSTMMSVVA DKTGYPAEML ELSMDMEADL GIDSIKRVEI LGTVQDELPG LPELNPEDLA ECRTLGEIVS YMQTKLPATN TEAPVSAPAT PGLSADTVLS TMMSVVADKT GYPAEMLELS MDMEADLGID SIKRVEILGT VQDELPGLPE LNPEDLAECR TLGEIVCYMQ TKLPAANAIA PVAPTSTANK VDVNTAALPP HSEVALKKLP AADKLVDCFS TDSCIVITDD GHSAGLLAEK LNAKGLTVAV IRNPQTITVA HSPLSSDIKS YTLSSIDDAQ IAQVIADIKA DLGAEHAIAG FIHLQPQATA NSSELMSCTV AAKAAVDNAF LWAKHLHAEF AKPAQASRLC YFTVSRLDGG FGYLDNTQLA TAELNQAALS GLSKTLSHEW PQVFCRALDI ANNIDTTSFA DAIVAELFDI DGANASADRI NEVGISNQGR VTLVAENASE QFAPASLNKS DTILVTGGAK GVTFECALTL AKQCQSHFVL AGRSQHFGKD LPAWAQGKKA SELKAAAIAY IQSQGNKPTP KQIDALVWPI SSSLEIDAAL NAFSKVGASA QYVSMDVSNA TAVAASLNSL TNTKGDSLTI NGIIHGAGVL ADKHIQDKTL DELNRVYHTK VTGLASIINA LDPQQIKLIA LFSSAAGFYG NTGQSDYAMS NEILNKTALK LAHTLPQAKV MSFNWGPWDG GMVSSALKKM FVERGVYVIP LQAGAELFAH SLLSQQGAQL LIGSDMQGSS EQDNAVKKLN ADALLIAKGS LTFATNTLVT KAFTANAVTT EAVTTKSSAT DIISQTVTRV LTPAEMPFVS DHCIAGNPVL PTVCAMQWMR DAAETLCHVP VSIAEYKLLK GVIFDTNEPH LLQLALTQTD AGISALISSR LLSDPSAAMK PQYQAQLVIN KAILAADVAK PIIGDNSLAQ WANMTPLYSG AELYQNGTLF HGPRLQGIAQ VLAFDDAQLL CRVQLPQINA TDCQGFIPSS VLGGSQIFAE DLLLQAMLVW ARLKYDAASL PSTTGECVTA WPLANGDKGY IQLDVVKHSG RMLVANVSLY HQDGRLSCQM LNAKVTISKS LNGAFIPHQA SAELSHKDTV
|
| |