| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1218 |
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| Symbol | |
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| ID | 4278468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1429556 |
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| End bp | 1431184 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638133993 |
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| Product | 2-nitropropane dioxygenase, NPD |
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| Protein accession | YP_749909 |
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| Protein GI | 114562396 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | [TIGR02814] PfaD family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACTC AAGTGCACAA CGAAAAGCTT TCTCCTTGGC CATGGCAAGT TAGCCAGCAA
CACGTCAGTT TTGACTCTAC TGGCATGGAC AAAAAGCTTA AAGATTTATC ACAAGCGTGT
TATGTGGTTA ACGACACACA ACAAGGCTTA GGGGTTGCTC AGCAAGCCCA AGTCGTAACT
GATGCTATTA CTGCAGCAAA TGCTCTGCCG GTCAGCGCAT TTGCCCCTGC CCTTGGCACC
CAAAGCTTAG GCGACAGTAA TTTCCGCCGC GTGCACGGGG TAAAATTTGC CTATTATGCT
GGCGCAATGG CCAATGGTAT TTCTTCTGAA GAATTGGTTA TTGCATTAGG TCAGGCGGGT
ATTTTATGTT CATTTGGCGC AGCAGGATTA ATTCCGTCAC GGGTTGAACA AGCAATAAAC
CGCATTCAAG CCGCGCTGCC AAACGGGCCT TATGCGTTTA ATTTAATCCA CAGCCCAAGT
GAGCCAGCGT TAGAGCGTGG CAGTGTCGAG CTGTTTTTAA AGCACAAAGT GCGCACTGTT
GAGGCCTCTG CCTTTTTAGG CTTAACACCA CAAATTGTCT ATTACCGCGC AGCGGGCTTA
AGCCGTGACA AACACGGTGA CATTCAAATC GACAATAAAG TGATTGCAAA AATCAGCCGT
ACTGAAGTCG CCATTAAGTT TATGCAACCT GCACCCGTTA AAATACTGCA ACAGTTGGTT
GATGAAGGAC TTATTAGCGC AGAACAAATG GAGCTGGCTC AATTAGTGCC CATGGCTGAT
GATATTACCG CTGAAGCAGA TTCAGGCGGT CACACAGACA ATCGCCCATT AGTCACTTTA
CTGCCGACCA TTTTAGCGTT AAAAGATGAA GTGCAAGCAC AATACAACTA TAAAATTCCT
ATTCGGGTTG GCGCCGGTGG CGGTGTTGGT ACGCCCGACG CGGCACTGGC GACATTTCAT
ATGGGTGCAG CCTACATTGT TACCGGTTCA ATCAACCAAG CCTGTGTAGA AGCTGGAGCC
AGCGTGCATA CACGTAAATT ACTGGCCACT ACAGAAATGG CCGATGTGAC CATGGCGCCA
GCCGCCGATA TGTTCGAAAT GGGTGTTAAG CTGCAAGTGG TAAAACGCGG TACTTTATTC
CCAATGCGGG CCAACAAGTT ATACGAAATT TATACCCGCT ATGATTCGAT TGAAGCGATA
CCAAAGGACG AGCGCGAAAA GCTTGAAAAA CAAGTATTCC GCTCAAGCCT GGATGATATT
TGGGCTGGTA CAGTAGCGCA TTTTAATGAG CGCGACCCAA AGCAAATAGA GCGCGCTAAA
GATAATCCTA AACGTAAAAT GGCGTTGATT TTCCGTTGGT ACTTAGGTCT GTCTAGCCGT
TGGTCAAACA CTGGTGAACT TGGACGCGAG ATGGATTATC AAATCTGGGC AGGTCCGGCA
CTCGGCGCGT TTAACGCATG GGCTAAAGGC AGTTATTTAG ATGACTATAC TCAGCGTCAT
GCAGTAGATT TAGCCAAACA CTTAATGCAT GGCGCGGCTT ATTTAGCCCG AGTAAATTTA
TTAACAGCGC AAGGTGTTAG CCTTCCTGTA GCATTACAGC GCTGGCGCCC AATTGATCAA
GTAAAGTGA
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| Protein sequence | MTTQVHNEKL SPWPWQVSQQ HVSFDSTGMD KKLKDLSQAC YVVNDTQQGL GVAQQAQVVT
DAITAANALP VSAFAPALGT QSLGDSNFRR VHGVKFAYYA GAMANGISSE ELVIALGQAG
ILCSFGAAGL IPSRVEQAIN RIQAALPNGP YAFNLIHSPS EPALERGSVE LFLKHKVRTV
EASAFLGLTP QIVYYRAAGL SRDKHGDIQI DNKVIAKISR TEVAIKFMQP APVKILQQLV
DEGLISAEQM ELAQLVPMAD DITAEADSGG HTDNRPLVTL LPTILALKDE VQAQYNYKIP
IRVGAGGGVG TPDAALATFH MGAAYIVTGS INQACVEAGA SVHTRKLLAT TEMADVTMAP
AADMFEMGVK LQVVKRGTLF PMRANKLYEI YTRYDSIEAI PKDEREKLEK QVFRSSLDDI
WAGTVAHFNE RDPKQIERAK DNPKRKMALI FRWYLGLSSR WSNTGELGRE MDYQIWAGPA
LGAFNAWAKG SYLDDYTQRH AVDLAKHLMH GAAYLARVNL LTAQGVSLPV ALQRWRPIDQ
VK
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