| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1194 |
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| Symbol | fliR |
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| ID | 4277063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1403248 |
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| End bp | 1404051 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133969 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_749885 |
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| Protein GI | 114562372 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATATTT TGTTTGATGA AATCAGTCAA ACAATTGCCG CATATCTTTT GCCGTTTTTT
CGTATTTCAT CCATGCTCAT GGTGATGGCG GTATTTGGCG CCAATACTAC TCCTGCTCGA
GTTCGATTGA TGTTATCCGT AGCGATAACG ATGGCCGTGG CGCCTATTTT ACCCCCTATT
GAAAACGTCG AGTTACTGGC ATTGAGTTCT GTTTTTGTCA TTGCTCAGCA AATTTTAATT
GGCGTCACCA TGGGATTTGT GACCTTAATG GTGATGCAGA CATTTGTATT AACAGGGCAA
ATAATTGGTA TGCAAACCAG TTTAGGTTTT GCCTCTATGG TCGACCCCGG TTCTGGTGAG
CAAACGCCTG TTGTGAGTAA CTTTTTCCTA TTATTAGCAA CACTTATCTT TTTAGCTGTT
GATGGCCATT TGTTAATGAT ACGGATGTTA GTGGCCAGTT TTGAAACCAT TCCTATTTCA
AATCAAGGTA TATCAATTGC CAATTATCGT GCGCTTGCTG ATTGGGGAAG TTTTATGTTT
GGCTCTGCGT TAACGATGTC GATTTCGGCT ATTGTTGCGT TGTTATTAAT CAATTTATCC
TTTGGTGTGA TGACCCGCGC CTCACCTCAA TTAAATATTT TCTCTATTGG TTTTCCGGTC
ACAATGGTCA GTGGTTTGTT GATTTTGTGG TTAACATTAG CACCTATCAT GGCGCATTTT
GATGAAGTGT GGATGGCTGC GCAGTTACTT ATGTGTGATG TTCTGCAACT TCAATGTCAA
CTTGATGGCT CAGTAGTATT CTAA
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| Protein sequence | MDILFDEISQ TIAAYLLPFF RISSMLMVMA VFGANTTPAR VRLMLSVAIT MAVAPILPPI
ENVELLALSS VFVIAQQILI GVTMGFVTLM VMQTFVLTGQ IIGMQTSLGF ASMVDPGSGE
QTPVVSNFFL LLATLIFLAV DGHLLMIRML VASFETIPIS NQGISIANYR ALADWGSFMF
GSALTMSISA IVALLLINLS FGVMTRASPQ LNIFSIGFPV TMVSGLLILW LTLAPIMAHF
DEVWMAAQLL MCDVLQLQCQ LDGSVVF
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