| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1182 |
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| Symbol | fliF |
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| ID | 4278450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1391931 |
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| End bp | 1393607 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133957 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_749873 |
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| Protein GI | 114562360 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAGGTT CGGGTTCAAC AGCCGATGGC GGTGTCCAAC AAGAGAACAA ATCTGGACTT
CTTGGTGGCG TTGGTGGTGC AGATATGATG CGTCAAGTCA TCATGATTCT GGCACTAGCG
ATATGCCTTG CTTTGGCTGT TTTTGTGATG ATGTGGGCCC AAGAGCCTGA TTATCGCCCA
CTTGGGAAAA TGGAAACAGC TGAGATGATC CTAGTCTTAG ATGTGCTTGA TAAAAACCAA
ATCGATTATC AAATAAACGT CGACGTGGTA AAAGTGCCTG AAGACAAATA TCAAGAAGTG
AAATTACTGC TCAGCCGTGC AGGTGTTCAA AGTAGTACTC AAGCAAATGA TTACTTAAAC
CAAGATAGTG GTTTTGGTGT CAGTCAGCGT ATGGAACAAG CGCGCTTAAA ACAAAGCCAA
GAACAAAACC TAGCCAGAGC CATTGAAGAA TTAAAAAGTA TTAGTCGTGC GAAAGTGATA
TTAGCGTTAC CAAAAGAAAA TGTTTTTGCC CGTAATGCAT CTAAACCCAG TGCCACAGTA
GTAGTCAATG TACGTCGTGG TGGCTTGGGC CAAGAAGAGA TTGATGCCAT TGTTGATATC
GTAGGCTCAG CAGTTCAAGG GCTTGAACCT GCTCGTGTTA CGGTAACTGA TTCAAATGGG
CGTTTACTCA ATTCCGGTAG TCAAGATGGT GCGTCCTCTA GAGCACGTCG TGAGCAAGAG
CTCGTACAAC AGCAAGAGGC TGAATACCGT AAGAAAATCG AGTCAATCTT GATGCCAATT
TTAGGCCCTG AGAATTTTAC TTCTCAAGTC GATGTGAATA TGAACTTTAC CGCAGTAGAG
CAAACGGCGA AGCGTTTCTC ACCTGATTTG CCGGCGATTC GTAGTGAAAT GATCATTGAG
AGAAATTCGT CTGGTCAAAA CTCTGGCGGT ATTCCTGGTG CGCTAAGTAA TCAACCACCA
ATGGAATCTG ATATTCCGCA AGTGGCAGGT GAAGCGACAG CTTCAACCAT GTCTGGTGAC
TCTTCAAAAG AAGCCACGCG TAATTATGAA TTAGACACTA CCATCAGCCA TACTCGCCAA
CAAATTGGGG TGGTTCGTCG TGTAAGCGTG TCAGTTGCGA TTAACTTTAA ACCCGGCCAA
GTAGATGAAA ATGGTGTGGT TGCTCGGGTA CCGAGAACAG AACAAGAGTT AACTAATATT
CGTCGTTTAT TAGAAGGCGC GGTAGGTTTT AGTACTCAGC GTGGTGATGC GCTGGAAGTG
GTAACCGTTC CGTTTATGGA TCAGTTAATT GAAGCGTTAC CTGAGCCAGA TATGTGGGAG
GAGCCTTGGT TTTGGCGTGC GATTAAATTG GCATTAGGCG CAATTGTTAT TTTAGTGCTC
ATTCTAGCTG TAGTGAGACC TATGCTTAAG AAGCTAACCA ATCCCAATGG AATCAACATG
CCTGACGATA TTCGTCCTGG ACATGAGTTA GCTGAAATTG AAGATCAATA TGCCGCAGAT
ACCTTAGGTA TGCTTAATAC CAAAGAGGCG GAATACAGTT ATGCCGATGA CGGGTCAATT
CAAATACCTA ATTTGCATAA AGATGATGAT ATGATTAAAG CAATTAGAGC GTTAGTGGCA
AATGAGCCTG AACTTTCCAC TCAAGTGATT AAAAACTGGT TACAAGACAA TGGCTAA
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| Protein sequence | MVGSGSTADG GVQQENKSGL LGGVGGADMM RQVIMILALA ICLALAVFVM MWAQEPDYRP
LGKMETAEMI LVLDVLDKNQ IDYQINVDVV KVPEDKYQEV KLLLSRAGVQ SSTQANDYLN
QDSGFGVSQR MEQARLKQSQ EQNLARAIEE LKSISRAKVI LALPKENVFA RNASKPSATV
VVNVRRGGLG QEEIDAIVDI VGSAVQGLEP ARVTVTDSNG RLLNSGSQDG ASSRARREQE
LVQQQEAEYR KKIESILMPI LGPENFTSQV DVNMNFTAVE QTAKRFSPDL PAIRSEMIIE
RNSSGQNSGG IPGALSNQPP MESDIPQVAG EATASTMSGD SSKEATRNYE LDTTISHTRQ
QIGVVRRVSV SVAINFKPGQ VDENGVVARV PRTEQELTNI RRLLEGAVGF STQRGDALEV
VTVPFMDQLI EALPEPDMWE EPWFWRAIKL ALGAIVILVL ILAVVRPMLK KLTNPNGINM
PDDIRPGHEL AEIEDQYAAD TLGMLNTKEA EYSYADDGSI QIPNLHKDDD MIKAIRALVA
NEPELSTQVI KNWLQDNG
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