Gene Sfri_1177 details

Gene Information

• Locus tag: Sfri_1177
• Symbol: fliS
• ID: 4278445
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1385868
• End bp: 1386272
• Gene Length: 405 bp
• Protein Length: 134 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638133952
• Product: flagellar protein FliS
• Protein accession: YP_749868
• Protein GI: 114562355
• COG category: [N] Cell motility; [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1516] Flagellin-specific chaperone FliS
• TIGRFAM ID: [TIGR00208] flagellar biosynthetic protein FliS

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0776613
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAAGCT CACTACAGTC ATATCGAAAA GTATCGCTAG AAAGCGAAAT AGCGGTGGCT 
TCGCCACATC GCATTATACA AATGATGTTT GAAGGCGCAT TGCAACGTAT AGCCCAAGCA 
AAATACGCTA TTCAACAGAA AAATCCTGCT CAAAAAGGCG AGAATATCGG TAAAGCCGTT 
AGTATTATTG CTGGGTTGAG CGGTAGCCTA AACATGGATG CTGGTGCTGA TGTTTCTGCT 
AATTTAGATT CGCTTTACGA GTACATGCTA AGACGATTAT CTGAGGCTAA TGTCGCTAAT 
GATATAGAGA TGCTCGAAGA GGTTTCTGCT TTAGTCAGAA CCATTAAAGA AGGTTGGGAT 
ACCATCCCTC AAGATATGCA TGAGCTAACT TCTGAAGCGA GTTAA 

 

Protein sequence

MRSSLQSYRK VSLESEIAVA SPHRIIQMMF EGALQRIAQA KYAIQQKNPA QKGENIGKAV 
SIIAGLSGSL NMDAGADVSA NLDSLYEYML RRLSEANVAN DIEMLEEVSA LVRTIKEGWD 
TIPQDMHELT SEAS