Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1175 |
Symbol | |
ID | 4278443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1384065 |
End bp | 1385429 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133950 |
Product | flagellar hook-associated 2 domain-containing protein |
Protein accession | YP_749866 |
Protein GI | 114562353 |
COG category | [N] Cell motility |
COG ID | [COG1345] Flagellar capping protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000468888 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGATTAA CATCGGTAGG GCTAGGTTCG GGCCTAGACA TTAACGGTAT TGTATCTGCT TTAGTTAGCT CTGAACAAGC CCCAAAAGTT GCTCAGTTTA ACGCCAAAGA GGGCGCGATA AATGCTGAAA TATCAGCGTT GGGCTCTTTA AAAAGTTCGT TATCTGAATT TAAAAGTAGT TTAAGTTTTC TGTCTAAAAC AACATCATTC GATAGTCAGA GCGTGTCGCT TTCTAAGAGT ACTTACCTAA GTGCAACTGT GAGTAACAAT GCGGTGTCTG GCAGTTATAA TGTTGCCGTT GAGCAACTAG CTGTTAGTCA AAAAGTTGGC TCTGCGGCCG TGAGCGATGT GACGGCAGCG TTAGATGAAG GCTCGTTAAA TTTTGCCGTT GATGGCAATA GCTTTGATGT CGCAGTCACC ACAGAAGATA CTTTACAAAC ATTAGTGTCT AAAATTAACT CAGCTAAAGA TAATGTTGGC GTTACCGCTA CCATAGTTAA CAGTGATGGT GGTGCAAAAT TAGTATTAAC CTCCAACAAA ACCGGTACCG CCAATAATAT AACGGTTTCG GCAACTGATA CTGGTGCCGG TACTGTGTTG GCCGATACCT TTGCTATGAC TGAATTGCAA CCTGCCAAAG ATTCGATTAT ATACATTGAC GGCTTAAAGC TTACTTCGAG CAGTAATACC GTAGAGGGCG CCATTGATGG TGTGACCCTT AACCTTAAAG ACGCCGATAT CGATAAGCCA ACCACATTAA CTGTTGCACA AAATACCAGT TCAATAAAAA GTGGCATAAA ATCATTTGTT GAAGCGTTTA ACTCGATGTC GAAAACAATT ACTGATTTAA CCAGTTACAA TGCTGCGACC GAAACTGCGG CTGTTTTGCA AGGGGATTCG TTACCTCGCG GGATCCAAAG TCAGTTGCGC GGTGTTATTT CATCTGCATT CTCAACATCA AGTGGTAATT TATCACTTGC CTCTATCGGC ATTACCACCA CACGTAGTGG CACCTTAGAA ATAGATGACG ATATTTTAAC CGCAGCATTA AAAAACAATG TTACTGGTAT TAAAGAAATG TTTACCGCTG AAGATACTGG TGTGGCTGCA AAATTAGACG GCTATCTTGA TTCGTATGTT GGCACCGGTT CTATTATTGA TAGCCGCGAT AGCTCCTTAG ACGGTAATTT AGAGCGCTTG AGTGATCAGC GAGAAGTGTT TGCTCGAAAA ATGGCGGCAT TTGAAGCGCG CTTGTTTAAA CAATATAACT ATATGGATTT GATTGTGGGT CAATTAAGTA CCCAGAGTTC CGATTTACAA TCACGACTCG ATTCACTTCC AGGGCTTGTG AGTCAAAATA ATTAA
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Protein sequence | MGLTSVGLGS GLDINGIVSA LVSSEQAPKV AQFNAKEGAI NAEISALGSL KSSLSEFKSS LSFLSKTTSF DSQSVSLSKS TYLSATVSNN AVSGSYNVAV EQLAVSQKVG SAAVSDVTAA LDEGSLNFAV DGNSFDVAVT TEDTLQTLVS KINSAKDNVG VTATIVNSDG GAKLVLTSNK TGTANNITVS ATDTGAGTVL ADTFAMTELQ PAKDSIIYID GLKLTSSSNT VEGAIDGVTL NLKDADIDKP TTLTVAQNTS SIKSGIKSFV EAFNSMSKTI TDLTSYNAAT ETAAVLQGDS LPRGIQSQLR GVISSAFSTS SGNLSLASIG ITTTRSGTLE IDDDILTAAL KNNVTGIKEM FTAEDTGVAA KLDGYLDSYV GTGSIIDSRD SSLDGNLERL SDQREVFARK MAAFEARLFK QYNYMDLIVG QLSTQSSDLQ SRLDSLPGLV SQNN
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