| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1140 |
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| Symbol | |
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| ID | 4278041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1341591 |
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| End bp | 1343021 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133914 |
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| Product | putative transglycosylase |
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| Protein accession | YP_749831 |
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| Protein GI | 114562318 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAA CCTTATTCAT AATCTTACTT TGCGGGATTC TATCCGCCTG TCAACCTGTT
GATATTCAAG ATGTTGATAT TGCCGCTCCT GCACCTAAGC GTACCGTATT AAAGGTAGGG
ACCTTATATG GCCCACAGAT TTATCTGAAT TCAGAACAGG GTGAAAGCGG ATTCGATTTT
GAAATGGCGC AGCGCTTTGC TGACTATTTA GCCGTCCCTT TAGAGATGAT CCCGTATACC
AATCGCAAGC AATTATTTGC GGCATTAAAA GAAAACAAGA TTGATATTAT TGCGGCCGGT
ATCGCTAAAA CCCCCAACCG CAGTCAACAA TTCAAGCTCG GACCAACATT ATATAAAGTC
AACCAAGTAC TGGTATATAA GGAAGGCACT CCGGAACCCA AAGACATTAG CACTCTGTCG
GGTGAGATTA CCGTCATGGC TAACTCATCG TCGGTCAATA CCTTAACCAA ATTACAAAAA
GACTATCCTG AGTTGATGTG GAATCAAGTC AACGACAAAG ACAATGAAGA ACTGTTTGCA
CTAATAGCCA ACGGTGAACT GAACTACACC ATTTCAGATT CAAATAGTTT ATTGATCAAT
CAACGCTTTT TACCCGAACT GCGCGCGGGA ATGATTTTAG AAGAAAAAGT CGAAGTGGTG
TGGCTATTAC CGCCGAATAA CAGCGATCGT TTAATGAGTA AGTTGTTGGC TTTTTGGCAT
AAAGAAAGGC GTGCGGGTAC GCTGGAGCAT TTAAACGAGA AGTATTTTGG CCACGTAAAA
CGTTTTGATT ACGTTGATAC TCGTGCCTTT ATCCGCGCAA TTGATAATAT TCTTCCCGAA
TATCGCAGTT TTTTCGAGGA GTATTCTGGA GAGTTAGATT GGCGTAAATT AGCGGCCGCC
AGTTATCAAG AATCACACTG GAATCCGAGT GCTCGCTCAC CTACTGGAGT GAGAGGTATG
ATGATGCTAA CCCAGCCTAC AGCAGCTTAC GTCGGTGTAG ATGATCGTCT AGATGCAGAA
CAAAGCATAC GTGGTGGCGC ATTTTATTTA AAAGACATGA TGGAGAGACT GCCAGACACC
ATTTCTGAAG CTCAACGGAT CTGGTTCGCA CTGGCGTCTT ATAATATCGG TTTAGGCCAT
GTTGAAGATG CGCGCCGATT AACAGAATCA ATGGGAATGG ATCCAAGCGC ATGGCGTGAT
GTCAAAAAAG TATTACCTTT GCTGCAACAA TCTAAATATT ATAAACAAAC TCGCTATGGT
TATGCTCGTG GTAGTGAAGC TGTCCATTAT GTTGACAGTA TTCGTCGTTA CTACGACACC
TTAGTTTGGA TCGATAATCA AACCAAAACA ATGGAGATTA TCGAAGAGAA AGAACAAGTT
GAAGTGATTG CAGAAGAAGT GCCAGCCAAA AGTCACGTAT CGGCGCAATA A
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| Protein sequence | MIKTLFIILL CGILSACQPV DIQDVDIAAP APKRTVLKVG TLYGPQIYLN SEQGESGFDF
EMAQRFADYL AVPLEMIPYT NRKQLFAALK ENKIDIIAAG IAKTPNRSQQ FKLGPTLYKV
NQVLVYKEGT PEPKDISTLS GEITVMANSS SVNTLTKLQK DYPELMWNQV NDKDNEELFA
LIANGELNYT ISDSNSLLIN QRFLPELRAG MILEEKVEVV WLLPPNNSDR LMSKLLAFWH
KERRAGTLEH LNEKYFGHVK RFDYVDTRAF IRAIDNILPE YRSFFEEYSG ELDWRKLAAA
SYQESHWNPS ARSPTGVRGM MMLTQPTAAY VGVDDRLDAE QSIRGGAFYL KDMMERLPDT
ISEAQRIWFA LASYNIGLGH VEDARRLTES MGMDPSAWRD VKKVLPLLQQ SKYYKQTRYG
YARGSEAVHY VDSIRRYYDT LVWIDNQTKT MEIIEEKEQV EVIAEEVPAK SHVSAQ
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