Gene Sfri_1139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1139 
Symbol 
ID4278040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1340706 
End bp1341275 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content46% 
IMG OID638133913 
ProductCMP/dCMP deaminase, zinc-binding 
Protein accessionYP_749830 
Protein GI114562317 
COG category[F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0590] Cytosine/adenosine deaminases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.414141 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACAGATA CCCCAAAAGC ACACGTTTCC ACCGATACTT GCCCACTTTC TAATGCGCAC 
AATGATAAAT CGAATCAGCT TCAGCGCGCC ATTGATGAAA AGTGGATGCG TTTAGCGATG 
CAACTTGCCG AGCAAGCCGA GCTAAAAGGC GAAGTGCCTG TGGGTGCCGT ATTGGTTAAA 
GACGATGTAT TGATTGCTAG TGGTTGTAAT TTAAGTATTG TAAATCACGA CCCGACCGCT 
CACGCCGAGA TGGAATGTAT TCGTCAAGCC GGCAAGGTGT TAGAAAATTA TCGTATGCTC 
GACACCACTT TATATGTCAC GTTAGAGCCC TGCACTATGT GCGCGGGTGC CATGGTGCAC 
AGCCGTATTA CGCGGGTTGT GTATGGTGCG GATGATTTAA AAACTGGCGC GGCGGGTAGT 
GTGATTAATT TATTGCAACA TCCTGTGTTT AATCATCAGC TTGAAGTGAG TTCAGGTGTG 
TTGGCAGCAG AATGTGGCGC GCAATTAAGT GCATTTTTTC AGCGACGTAG AGCAGAAAAA 
AAAGCACTCA AACAGTTAGC TAAAAAATAG
 
Protein sequence
MTDTPKAHVS TDTCPLSNAH NDKSNQLQRA IDEKWMRLAM QLAEQAELKG EVPVGAVLVK 
DDVLIASGCN LSIVNHDPTA HAEMECIRQA GKVLENYRML DTTLYVTLEP CTMCAGAMVH 
SRITRVVYGA DDLKTGAAGS VINLLQHPVF NHQLEVSSGV LAAECGAQLS AFFQRRRAEK 
KALKQLAKK