Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1127 |
Symbol | |
ID | 4277048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1326499 |
End bp | 1327395 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638133901 |
Product | ApbE family lipoprotein |
Protein accession | YP_749818 |
Protein GI | 114562305 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.390448 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAAAG CCCCAAAAGT GATGAGCTTA CAGCCTCGTC CTTGGGGCTT TTTAGGTTCA TTTAACGCTA TGGCTAGCCC ATGTGAATTA TTAATGGCGA TTGATGATGA GCATACTGCG AGGCAAATGC TGACTATTGC TTACGACGAA GCAAAGCGTA TAGAACATAA ATTTAGCCGT TTTATTGAAG GTAACGTGGT GTGGCAGTTA AATCATGCCC AAGGTAAAGC AACCTCGGTC GATGCCGAAA CAGCTCATTT ATTACAGTTT GCTCAACAGT GTTTTCAATT AAGTGAATCA GCTTTTGATA TCAGTGCCTG TCCTTTAATG GCGTTATGGC GCTTTGATGG TAACCATCGA GTGCCGTTAC AAACTGATAT TGATGCCGCT TTGCTTAAGG TGGGTTTTGA TCGCATTGCA TTGACTGATA AGACCGTTTG CATGCCTGCA GACATGAGTG TCGACTTTGG CGGTATCGGT AAGGAATATG CGGTGGATCG CACTGCACAA ATATTAGCGA ATCGTTGGCC AAATCAATCG GTATTAGTCA ACTTTGGGGG CGACATTGCT TGCCCTATCA CCAAAAGTGA CGGTTGGCAG GTTGGGATTG AAAACCCGAA TAAGCTTGAT AACGCTGCAG CTCTGTTAAC CATTCGCCAA GGGGCGTTAG CCACTAGTGG CACGACTCGG CGTTATATTG AGGTAGACGG TAAACGTTAT GGGCATATTA TTAATCCTCA AACGGGATAC CCTGTAGAAC AAGCGCCATT ATCTGTCACT GTGCTGGCGC CCAATTGTGT TATGGCTGGA ATGTTGGCCA CAATGTCGAT GCTAAAAGGA GCTGATGCTG AAGATTTTTT ACAGCAACAA GGTGTCGATT TTAAGGTATT TCGTTAA
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Protein sequence | MSKAPKVMSL QPRPWGFLGS FNAMASPCEL LMAIDDEHTA RQMLTIAYDE AKRIEHKFSR FIEGNVVWQL NHAQGKATSV DAETAHLLQF AQQCFQLSES AFDISACPLM ALWRFDGNHR VPLQTDIDAA LLKVGFDRIA LTDKTVCMPA DMSVDFGGIG KEYAVDRTAQ ILANRWPNQS VLVNFGGDIA CPITKSDGWQ VGIENPNKLD NAAALLTIRQ GALATSGTTR RYIEVDGKRY GHIINPQTGY PVEQAPLSVT VLAPNCVMAG MLATMSMLKG ADAEDFLQQQ GVDFKVFR
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