| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1116 |
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| Symbol | ispG |
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| ID | 4277037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1316796 |
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| End bp | 1317911 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133890 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_749807 |
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| Protein GI | 114562294 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATAACG AATCCCCAAT TATTCGCAGA CCATCTACCC GAATTTATGT AGGCAATGTG
CCTATTGGTG ATGGTGCGCC GATTGCCGTC CAATCGATGA CGAATACTAA AACTACCGAT
GTTGCCGCCA CCGTAGCTCA AATTCGAGCA TTAGAAAAAG TCGGCGCTGA TATTGTACGT
GTTTCAGTGC CGACTATGGA TGATGCTGAA GCGTTTAAAA TTATCAAACA GTCTGTCAAT
GTGCCATTAG TGGCCGATAT TCATTTCGAT TATCGTATCG CGCTTAAAGT CGCTGAATAC
GGTGCAGATT GCCTGCGTAT TAACCCAGGT AATATTGGTA ATGAAGAACG CATTCGTAGT
GTGGTTGAGT GCGCGCGCGA TAAAAACATT CCCATCCGTA TCGGAGTGAA TGGTGGCTCG
CTTGAAAAAG ACTTAATGGA CAAATATCGT GAACCAACGC CTGAAGCATT ATTTGAATCA
GCGATGCGTC ATGTGGATAT TTTGGACCGT TTGAACTTTG ATCAATTTAA AGTCAGCGTT
AAAGCGTCAG ATGTTTTCCT TGCTGTCGCA TCATACCGTC TGCTGGCTAA ACAAATTCGT
CAACCGTTAC ATCTTGGTAT TACCGAAGCC GGCGGCATGC GTGCAGGTTC AGTTAAATCA
GCTGTCGGTT TAGGCATGTT ATTAGCTGAA GGCATTGGTG ATACTTTACG TATTTCGTTA
GCGGCCGATC CGGTTGAAGA AATTAAAGTT GGTTTTGATA TTTTAAAGTC GCTACGTATT
CGTAGCCGTG GCATTAACTT TATTGCTTGT CCTTCTTGTT CGCGCCAAGA GTTTGATGTG
ATTAGTACCG TCAATGAACT TGAACGTCGT CTTGAAGACA TTACCACTGC AATGGATGTG
TCAATTATTG GTTGCGTAGT CAATGGTCCA GGCGAAGCGT TAGTGTCTGA TATCGGCTTA
ACTGGCGGCC ATGCTAAGAG CGGTTATTAT GATGACGGAG TACGTCAAAA AGAGCGCTTT
GATAACAATA AAATCATCGA TGGTTTAGAA GCCAAGATCC GTGCTAAAGC GAGCATGATG
GCCAACCGCA TCGCTATAAC CGACAAAACT GAATAA
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| Protein sequence | MYNESPIIRR PSTRIYVGNV PIGDGAPIAV QSMTNTKTTD VAATVAQIRA LEKVGADIVR
VSVPTMDDAE AFKIIKQSVN VPLVADIHFD YRIALKVAEY GADCLRINPG NIGNEERIRS
VVECARDKNI PIRIGVNGGS LEKDLMDKYR EPTPEALFES AMRHVDILDR LNFDQFKVSV
KASDVFLAVA SYRLLAKQIR QPLHLGITEA GGMRAGSVKS AVGLGMLLAE GIGDTLRISL
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELERR LEDITTAMDV
SIIGCVVNGP GEALVSDIGL TGGHAKSGYY DDGVRQKERF DNNKIIDGLE AKIRAKASMM
ANRIAITDKT E
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