| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1115 |
|---|
| Symbol | |
|---|
| ID | 4277036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1315787 |
|---|
| End bp | 1316764 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133889 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_749806 |
|---|
| Protein GI | 114562293 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1426] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAG AATTCGAAGT AGAACAAGAC GCAGAAAAAG CGCCATTGTT AAAGGATGTT
GTTACTGCTG GCGCCATTTT AAAAGCGGCT CGCGAAGCAA AGGGACTCTC ACTTGAGACC
GTAGCAACCC AATTGCATTT ACGTCCCAAG ATTATCAATG ATCTTGAAAA CGACATATTT
GTTAATATTG CCTCTACCAC ATACGTTAGA GGTTATATTA AAAATTATGC CCGTGTTGTG
AATGCCGATA TTAACCAAAT TCAACAATGT TTAAGCCATC AGTTGCCTGA AATTGTTGCG
CCTGCAATGC AAAGTTTTTC ACGTAAGACG ACTCATCAAG CTCGTAATAG TCGTCTTAAT
TTAGTGACCT ACCTTATTGT TGCTGTATTG ATTGCCATGT TAGTGCTGTG GTGGGTACAA
AAATCATCGT TACTAACCAA TATTGATTTA TCACAGCCTA CTGTTGAAGA AATTGCAGCT
GAAAGCAATA TGCCTGAACC GCAACAGATC ATTAGAAGTG GCTCTGTACA ATCCAGTGGT
AATGGTTTAG ATAACGAAGG CAATGTTAGT GCAACAGATG TGGCTAATCA GGCAGCAATA
GAAGCCGAGG ACAAACTGAT TCAAACGGCC CAAGATGCAG CGACTGCTTC ACAGTCATTA
CCCGCTAGCA GTGTTGTTGA AAGTACTAAT ATTGTATCTT CATCAACAGC AGATACTAGT
TTAGCAGGTG CCGAGAGCGT GTTAACCATT GAGCTCACCG GTGACTGCTG GGTTAACGTA
ACCGATGCTA ATGGCAAAGT GATGGTTGAT GGCGTGAAAA ATGCGGCACA ACGAATTGAA
GTTCGTGGAA TAAAACCTTT TAAAGTGATT TTGGGTGCGC CTCAAGTAGC CAGCATCAGC
CTCGATGGCA ATAACGTCAG TTTAGCTGAG TTTGCCAACG GTCGAGTTGC AAGATTAACC
CTGCCTAAAG CGTCATAA
|
|---|
| Protein sequence | MTKEFEVEQD AEKAPLLKDV VTAGAILKAA REAKGLSLET VATQLHLRPK IINDLENDIF
VNIASTTYVR GYIKNYARVV NADINQIQQC LSHQLPEIVA PAMQSFSRKT THQARNSRLN
LVTYLIVAVL IAMLVLWWVQ KSSLLTNIDL SQPTVEEIAA ESNMPEPQQI IRSGSVQSSG
NGLDNEGNVS ATDVANQAAI EAEDKLIQTA QDAATASQSL PASSVVESTN IVSSSTADTS
LAGAESVLTI ELTGDCWVNV TDANGKVMVD GVKNAAQRIE VRGIKPFKVI LGAPQVASIS
LDGNNVSLAE FANGRVARLT LPKAS
|
|---|
| |