Gene Sfri_1113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1113 
Symbol 
ID4277034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1313849 
End bp1314970 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content41% 
IMG OID638133887 
Productribosomal RNA large subunit methyltransferase N 
Protein accessionYP_749804 
Protein GI114562291 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.686108 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGTAA AGAAAATCAA TTTATTAGAT CTTGATCGTA AAGGACTACG GGCGTTGTTC 
AGTGAAATGG GCGAAAAACC GTTTCGTGCC GATCAGTTAA TGAAGTGGGT TTATCACTTT
GGTGTTACTG ACTTTGAAGA AATGAACAAC ATAAACAAAG TGTTGCGTAC CAAGCTTGCA
GCAAAGTGTG AAATAGTTGC GCCTGAAATT GCGAGTTTTC AAAAGTCGAA TGATGGCACT
ATTAAATTTG CTATCAATGT TGGCCAAGGC CAAGAAGTTG AAACCGTATA CATTCCTGAA
GAAGACCGTG CGACCTTGTG TGTATCATCA CAAGTCGGCT GTGCTTTAGA ATGTACTTTC
TGCTCAACGG GCCAACAAGG TTTTAATCGT AACTTAACGG TATCTGAAAT TATTGGCCAA
GTTTGGCGTG TATCGCAATT TTTAGGTTTC CACAAAGATA CTGGCGATCG ACCAATTTCT
AACGTAGTGA TGATGGGTAT GGGTGAGCCT TTGCTTAACC TTGCTAACGT GATCCCTGCG
ATGGATATTA TGCTAGATGA TTTTGGTTTT AGTTTATCTA AACGTCGAGT GACGTTATCA
ACTTCTGGTG TAGTACCTGC ACTTGATAAA TTAGGTGACG CCATTGACGT CGCACTAGCG
GTAAGTATTC ATGCACCTAA TGATGAACTG CGCGATGTGT TGGTTCCAGT TAATAAAAAA
TATCCATTAC AAGAATTTTT AGCGGGCATT CGTCGCTATT TAGAAAAGTC TAATGCAAAT
CGCGGCCGCG TGACGGTTGA ATATGTCATG CTTGATCATA TTAATGACAG CACAGACCAA
GCGCATGAAC TCGCGATACT AATGAAAGAT ACTCCATGTA AGATTAACTT AATCCCGTTT
AACCCGTATC CTGGTTCTCC TTACGGTCGT TCATCTAACT CACGCATAGA TCGTTTTTCT
AAAGTGTTGA TGGAACATGG CCTAACAGTG ATTGTTCGTA AAACCCGTGG TGATGATATT
GATGCTGCTT GTGGCCAATT AGCCGGTGAT ATTCGTGATA GAACAAAGCG TTTAGCAAAA
AAACAAATGC AACAGAATCA GATTTCAGTC ACAATGGAAT AA
 
Protein sequence
MSVKKINLLD LDRKGLRALF SEMGEKPFRA DQLMKWVYHF GVTDFEEMNN INKVLRTKLA 
AKCEIVAPEI ASFQKSNDGT IKFAINVGQG QEVETVYIPE EDRATLCVSS QVGCALECTF
CSTGQQGFNR NLTVSEIIGQ VWRVSQFLGF HKDTGDRPIS NVVMMGMGEP LLNLANVIPA
MDIMLDDFGF SLSKRRVTLS TSGVVPALDK LGDAIDVALA VSIHAPNDEL RDVLVPVNKK
YPLQEFLAGI RRYLEKSNAN RGRVTVEYVM LDHINDSTDQ AHELAILMKD TPCKINLIPF
NPYPGSPYGR SSNSRIDRFS KVLMEHGLTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK
KQMQQNQISV TME