| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1100 |
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| Symbol | |
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| ID | 4277163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1297400 |
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| End bp | 1299130 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638133874 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_749791 |
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| Protein GI | 114562278 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTTTT TTATTATCAT CGTGTTGCTT TTTAGCCGCG CGGCGATAGC TGGCAACGTC
GATTATGATA AAGAACTCGA CACTATAGAA CAATCTTTGA AGACTGACAT TGGTTATGCC
ATTGAAAAGA TTGATATCGC GTTATCCTCT GAATCATTAC TTACCTCACC ACAGCATAGT
CGTCTGTATA TGTTGCTAGG TACAAAAAAT CTTTATTTAG GTCATTTTCT CGAAGCAGAT
AAAGCTTTAG ATAAAGCACT GACTTACGAT CCACTCGGTG AAGAACTCAC AAATATTTAT
TTATTGAAAA CCACTGCAAA TATAGGATTG AGTAACTATA AAAAAGCTTT TGCTCTTTTA
GAGGACAACC TTTCTCGTAT CGACAGTTAT CAAGATCAAA GTATAAAAAT AATGTCTTAT
ATTCGTCTGA TGAATGTGTA TTTACAGCTT GATGCTTATG AGGAAATGCT ACGTATAGCG
CAATTAGCAC TAAGTCTAAA TCAAGGTAAA GACCCAAAAA GCGAATGTTT TTCGATGCTA
TATCACTCAG TGGCTCATTT GAAATTAACC CACTTTGACC AGGCAGAGGC ATTATTTACA
GACACCCAAC TTTATTGCAA AAACCATGGT TTTACATTGA TAGAGATTAT GTCTATCAAG
GGTAAAGCTA ATGTGTTGTT TGATAAGGGG TTGTATGCTG AAGCAGAACC TTTTTACCTT
GAGGCTTTAG AGCGTTATCA GAAGTTTCAA TTTCAAATTG AAATTAACGA AATACAGTCT
TATTTGAGCT CGATATATTT TCATCTGGGT GATTATCAAC AAGCTGATAT GTTTGCGCAG
TTAGTTAATG CTTTACCTAA TAAGCCTAGC AACATGCAGG TAAAAAAACG AGTTAGTGAA
ATATTGTCTT TAATTGCGGG TAAACGTGGT CAGTTTGATA AAGCATATCA GTATCAAGTT
GTGGCATCTG CCCTTGGTCA GCAATTAATT GATGAACAGA AAATAAAAGA AAATGCCTAT
CAAATGGCTC GCTTTGATAG TGTGGAAAAA AATCGTGAGA ATACTAGCTT GATCCAAGAC
CATGAATTAC TGATGAAACA AAAAGATTTA TTCATGAAAG AGAAAAGCTC ATCAATTATG
TTTTCAACAT TATTAGTAGG GCTTTCTGTA GGTTTATTGT TGTTATTAAT CTCTGCTTGG
ATGCAACGTA ATCAATTTAT GAAGCAAGCG CAGCGAGATG GATTGACAGG TATCTTTAAT
CGCCGCACCG GGCAAGAAAT GGCAGAAAAT GAATTTATTC AAGCTCAAAT GCTTGGTGAG
TCATTCTCTG TGTTGTTGAT GGATTTAGAT TTATTTAAAA ATATTAATGA TCAATATGGC
CATGCTACGG GTGATTGGGT GTTAAAAAAG GTCACACATG TGATTGGTGA TATGTTGAAG
CCGACTCATA TATTTACCCG AATGGGCGGT GAAGAGTTTG CTATCTTTAT GCCAAAGCAA
ACTGAAGATA TCGCGGTTGA ATTTGCCGAG CAGATCCGCA ATGCAATAGC CAATATTAAC
ACTCGTTTCT CAGGACACGA TTTTACTGTC ACGGTGAGTT GTGGTGTGAG TAGTGTCGAT
AAGGATGACC TAAGCCTCGA CCCGTTAATT CGCCGTGCGG ATTTAGCGCT GTATAAGGCC
AAGCATAATG GTCGAAATTG TGTCATCTGT TATAACGACA CCATCAAATA A
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| Protein sequence | MYFFIIIVLL FSRAAIAGNV DYDKELDTIE QSLKTDIGYA IEKIDIALSS ESLLTSPQHS
RLYMLLGTKN LYLGHFLEAD KALDKALTYD PLGEELTNIY LLKTTANIGL SNYKKAFALL
EDNLSRIDSY QDQSIKIMSY IRLMNVYLQL DAYEEMLRIA QLALSLNQGK DPKSECFSML
YHSVAHLKLT HFDQAEALFT DTQLYCKNHG FTLIEIMSIK GKANVLFDKG LYAEAEPFYL
EALERYQKFQ FQIEINEIQS YLSSIYFHLG DYQQADMFAQ LVNALPNKPS NMQVKKRVSE
ILSLIAGKRG QFDKAYQYQV VASALGQQLI DEQKIKENAY QMARFDSVEK NRENTSLIQD
HELLMKQKDL FMKEKSSSIM FSTLLVGLSV GLLLLLISAW MQRNQFMKQA QRDGLTGIFN
RRTGQEMAEN EFIQAQMLGE SFSVLLMDLD LFKNINDQYG HATGDWVLKK VTHVIGDMLK
PTHIFTRMGG EEFAIFMPKQ TEDIAVEFAE QIRNAIANIN TRFSGHDFTV TVSCGVSSVD
KDDLSLDPLI RRADLALYKA KHNGRNCVIC YNDTIK
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