Gene Sfri_1088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1088 
Symbol 
ID4277622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1286804 
End bp1287400 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content42% 
IMG OID638133862 
Producttranscriptional regulator, TetR family protein 
Protein accessionYP_749779 
Protein GI114562266 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACACG CTGAATTTGA TAGAGAAACG GTTTTACGTG CTGCAATGAG CACCTTTTTA 
GTGAATGGAT ACGCTAAAAC CAGCATGCAA GATCTCACTA AAGCAACGGG GCTACATCCG 
GGGTCAATTT ACTGTGCCTT TGATAATAAA AAAGGCTTAT TTATTGCTGC TATTGAGCAA 
TACCAACAAG ATCGTAATGA ACAGTTTCAG CAATTGTTTG CCAATGACCG ATCAGCAGTC 
GACAACTTAG GTGCTTATTT AGCGCTAATC GTACAAGAAT GTTTAAGCTG TGATGCTACC 
CAGGCGTGTT TACTGACCAA GTCACTCAGT GAAATGGGCG AGCAAGATGA ACAAATAAAA 
CAAATGACTT GCCAGTTTTT ACAGCTATGG CACCAGTCAC TTGCAATGGT GTTCGATACA 
GCAAAAGCGC AGAAGCTGAT AGCACAGGAC AGCGACAGTC AATTTTTAGC GCAGTATTTA 
GTGATGGGAA TATACGGTTT ACGAACAGTG GCTCACACTC AGCCTAATGA GCAAGTATTA 
CAGCCTTTAG CAGATAAACT GTTAGCTGAT TTACTACGCT GTGAGCCGGT AAAATAG
 
Protein sequence
MRHAEFDRET VLRAAMSTFL VNGYAKTSMQ DLTKATGLHP GSIYCAFDNK KGLFIAAIEQ 
YQQDRNEQFQ QLFANDRSAV DNLGAYLALI VQECLSCDAT QACLLTKSLS EMGEQDEQIK 
QMTCQFLQLW HQSLAMVFDT AKAQKLIAQD SDSQFLAQYL VMGIYGLRTV AHTQPNEQVL 
QPLADKLLAD LLRCEPVK