| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1078 |
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| Symbol | |
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| ID | 4277612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1275594 |
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| End bp | 1276232 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133852 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_749769 |
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| Protein GI | 114562256 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000713472 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTCACA AAAAGGATAA AATGGTGCCA ACATCAATAC ACCCTAAGGA TGAGTCGTTA
ATTCCTCAAG TGGGAAGTGA CGAGCAACTG ATGCTCGACT ACCAAGCCGG TGACGTACGC
GCGTTCGAAG CCTTATACCT TAAACACAAA GGCCCTTTGT ACCGATATTT TGTGCGTCAA
TTACATGACC AGCAGCTAGC CGAAGATTTG TATCAAGATA CCTGGGGTAA GGTGATTAAT
GCGGCGAAGC AATATCAAGT CACGGCTAAA TTCACCACTT GGTTATATAA AATTGCCCAT
AATTTATTGA TTGACCACGT GCGAGCCGTT AAGCCTCTCG ATAAGGTTAC CCCGCTTGGT
GAAGATGAAA CCATGGACAG CTTACAAGCC GACGATCAAG CTTCGCCCGA GCCACAAATT
GAGCAGCAGC AACAAGCCGA TATGATGAAG GGTTGCATTG CTAAGTTACC CGCAGTGCAA
AAAGAGGCTT TTTTACTCAA CATTGAAATG GGCATGACCG CCGCCATGAT AAGCGACATT
GCTAATGTGA CTTTAGAAGC AACTAAAAGT CGTATTCGTT ATGCTTATCA GAGTATTAAG
CAATGTATTG CTAATCAAAG GCAGGAGACA ACATTATGA
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| Protein sequence | MRHKKDKMVP TSIHPKDESL IPQVGSDEQL MLDYQAGDVR AFEALYLKHK GPLYRYFVRQ
LHDQQLAEDL YQDTWGKVIN AAKQYQVTAK FTTWLYKIAH NLLIDHVRAV KPLDKVTPLG
EDETMDSLQA DDQASPEPQI EQQQQADMMK GCIAKLPAVQ KEAFLLNIEM GMTAAMISDI
ANVTLEATKS RIRYAYQSIK QCIANQRQET TL
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