| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1063 |
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| Symbol | alaS |
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| ID | 4277825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1252831 |
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| End bp | 1255455 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133831 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_749754 |
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| Protein GI | 114562241 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCAGA CTACAGCAGA GTTAAGAAGC GCTTTTTTAA AGTACTTTGA AGATAACGGA
CATCAGGTTG TTGATAGCAG CTCGCTTGTT CCCACAAATG ACCCAACACT GTTATTCACC
AATGCGGGTA TGAACCAGTT TAAAGATGTG TTCCTCGGCA TGGATAAACG CAATTACACT
CGAGCGACAA CATCTCAACG TTGTGTGCGC GCGGGTGGCA AACATAACGA TTTAGATAAC
GTGGGTTATA CCGCTCGTCA CCATACTTTC TTTGAAATGT TAGGTAACTT TAGTTTCGGT
GATTATTTCA AAGAAGATGC AATTCGTTTT GCATGGACCT TTTTAACTGA AACGCTCAAG
CTGCCAAAAG AACGCCTCTG CGTGACTATT TATGAAACCG ATGATGAAGC ATATGATCTT
TGGACTCAAA AAATAGGTGT GCCAGCAGAA AACATGATCC GCATTGGTGA TAATAAAGGC
GGAGCTTTTG CGTCAGATAA CTTCTGGCAG ATGGGTGATA CCGGTCCTTG TGGTCCTTGT
AGTGAGATTT TCTACGACCA TGGCGATCAT ATATGGGGTG GCCGCCCAGG TACGCCTGAA
GAAGACGGTG ATCGCTTTAT TGAAATTTGG AACATTGTCT TTATGCAGTA CAACCGTCAA
GCCGACGGTG AAATGTTGCC ATTGCCAAAA CCTTCTGTTG ATACAGGTAT GGGTATTGAG
CGAATTGCTG CGATTATGCA AGGCGTGCAT TCAAACTACG AAATCGATAT TTTTAAACAA
CTTATTGCCA AAACTGCTGA AATTATCGGT GTAACTGATT TAGAAAATAA ATCTCTGCGT
GTTATTGCTG ACCACATTCG TTCATGTGCA TTTTTAATTG CTGATGGTGT AATGCCATCA
AATGAAGGTC GTGGTTATGT GTTGCGTCGT ATTATTCGTC GCGCAGTTCG CCATGGTAAC
AAGCTTGGCG CTAATGACGC ATTTTTCTAC AAACTTGTGC CAACACTTAT TAGCGTAATG
GGCGATGCCG CCATTGGCTT AAAACAAACT CAAGCTATTG TTGAAAAAGC CTTAAAAGCG
GAAGAGGAGC AGTTTGCTCG CACTCTTGAG CGCGGTTTAG TTATTTTAGA TGGCGCATTG
AATAGCTTGC AAGGTGATAC TTTAGACGGC GACACCTTAT TTAAACTTTA TGACACCTAT
GGCTTCCCTG TTGATTTAAC TGCAGATGTT TGTCGTGAAC GTGATATTAA CGTTGATGAA
GCTGGCTTTG AGTCTGCAAT GGCTGAACAA AGAAGCCGTG CACAAGCTGC AGGTAACTTT
GGTGCTGATT ATAATAGCCA ATTAATTATC GACGCAGAAA CCGCATTCAG TGGTTATACA
GAGTTAACTG GTCAGCCTAA TGTGATTGCT TTATATGTTG ACGGTAAAGC GGTTGATACC
GTGAAAGCGG GTCAGGATGC CGTAGTAGTA TTAGACAATA CTCCATTTTA TGCAGAATCT
GGTGGGCAGG TTGGTGATAA AGGCCTGCTG ACAGCAGATG GTGTAGTATT TACCGTTGCA
GACACTCAAA AATTTGGTCC AGCTACAGGT CACCAAGGTC AACTAGCTCA AGGTCAGTTA
GTGATCGGGC AACAGTTAAC CGCGCAGGTG GATAAAAAGT TACGCCATCG TACGCAATTG
AATCATTCTG TTACTCACTT ATTGCATGCT GCATTACGTC AAGTGTTAGG CTCACATGTG
TCTCAAAAGG GTTCACTTGT TAATCCTGAA CGCTTACGCT TTGACTTTGC TCATTTTGAA
GCGGTTAAGC CATCAGAATT GAAAGCTGTT GAAGACTTGG TTAACACCCA AATTCGTCGC
AACCATGAAC TTTGTACCGC CGAAATGGCC ATTGATGAAG CCAAAGAAAA AGGTGCAATG
GCATTATTTG GTGAGAAATA CGATGACCAA GTACGTGTTG TCACTATGGG GGATTTCTCT
ATCGAACTGT GTGGTGGTAC TCACGTTGGC CGCACTGGTG ATATTGGTTT ATTTAAAATT
ACTTCTGAGA ATGGCATTGC CGCAGGAGTA CGTCGTATTG AAGCTGTTAC GGGGATTGCT
GCAATGGCTT ATATTGCCGA GCAGCAAGCC ATGTTAGATG AAGCTGCACA ACTACTGAAG
TCCGATAGTG CTTCAGTTGT GGTCAAGTTA AAAGCTCAGC TAGATAAAGT GAAGCAATTA
GAAAAAGATT TATCCCAATT AAAAGATAAG TTAGCTGCTG CGGCCAGTGC CGATATGGCA
GGTGATGCGG TAGAAATTAA TGGTGTTAAA CTTTTAGTTA AACAGCTTGA TGGTATTGAT
CCTGGTTCAC TTCGTGGATT ACAAGATGAG CTGAAGCAAA AGTTAAAATC TGCGATTATT
GTGCTAGGTA CTGCTAAAGA CGGTAAAGTT AATTTAATTG CTGGTGTCAG CAACGATTTA
ACCAAAAAGG TCAAAGCGGG TGAGTTAGTT GCAATGGTTG CACAACATGT TGGCGGTAAG
GGCGGTGGAC GTCCTGATAT GGCACAAGCT GGTGGAACTC AGCCTGAGAA TTTAGCCGCA
GCATTAGCCC TTGTAGAGCC CTGGGTAAAC GAACGTTTAA GTTAA
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| Protein sequence | MFQTTAELRS AFLKYFEDNG HQVVDSSSLV PTNDPTLLFT NAGMNQFKDV FLGMDKRNYT
RATTSQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEDAIRF AWTFLTETLK
LPKERLCVTI YETDDEAYDL WTQKIGVPAE NMIRIGDNKG GAFASDNFWQ MGDTGPCGPC
SEIFYDHGDH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ ADGEMLPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFKQ LIAKTAEIIG VTDLENKSLR VIADHIRSCA FLIADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGANDAFFY KLVPTLISVM GDAAIGLKQT QAIVEKALKA
EEEQFARTLE RGLVILDGAL NSLQGDTLDG DTLFKLYDTY GFPVDLTADV CRERDINVDE
AGFESAMAEQ RSRAQAAGNF GADYNSQLII DAETAFSGYT ELTGQPNVIA LYVDGKAVDT
VKAGQDAVVV LDNTPFYAES GGQVGDKGLL TADGVVFTVA DTQKFGPATG HQGQLAQGQL
VIGQQLTAQV DKKLRHRTQL NHSVTHLLHA ALRQVLGSHV SQKGSLVNPE RLRFDFAHFE
AVKPSELKAV EDLVNTQIRR NHELCTAEMA IDEAKEKGAM ALFGEKYDDQ VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSENGIAAGV RRIEAVTGIA AMAYIAEQQA MLDEAAQLLK
SDSASVVVKL KAQLDKVKQL EKDLSQLKDK LAAAASADMA GDAVEINGVK LLVKQLDGID
PGSLRGLQDE LKQKLKSAII VLGTAKDGKV NLIAGVSNDL TKKVKAGELV AMVAQHVGGK
GGGRPDMAQA GGTQPENLAA ALALVEPWVN ERLS
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