| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1060 |
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| Symbol | |
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| ID | 4278225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1246740 |
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| End bp | 1247711 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133828 |
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| Product | RNA polymerase, sigma 28 subunit |
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| Protein accession | YP_749751 |
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| Protein GI | 114562238 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCGCA AAAATAATAC TGCTTCAGCA GAATGTCTTG TCGATCTAGC TAAACAACCA
CCAGAAGTTG CAACCGATAA ACGCGATTTG GTGCAACAAC TTGATATTGA AGAAAAAGTC
CAAGATGACT TACAGAAAAA TTTAGACGCT ACTCAATTAT ATTTAGGTGA AATAGGTTTT
TCTCCGCTAC TGACAGCAGA GGAAGAAGTG TTTTTTTCAC GTAAATCCCT CAAAGGATGC
GAAAAGTCTC GCAACCGCAT GATAGAAAGC AATCTCCGTC TTGTTGTTAA AATTTCCAGA
AGATATAACA ATCGTGGCTT AGCGCTGCTC GATCTTATCG AAGAAGGCAA TTTAGGCTTG
ATTCGAGCGG TTGAAAAGTT TGATCCTGAG CGTGGTTTCC GTTTTTCCAC TTATGCGACT
TGGTGGATTA GACAAACCAT TGAACGGGCA ATAATGAACC AGACTCGTAC TATTCGTTTA
CCGATTCATA TTGTAAAAGA ATTAAATGTG TACTTGCGGA CAGCAAGACA GCTTGCCCAA
AAGCTTGATC ACGAACCTAC AGCAGAAGAG ATTGCCGAAA AATTAGATGT GTCTACCGGT
GATGTCAGTC GTATGTTGAA GTTAAATGAA AGAATCACTT CGGTAGACTC GCCTCTCAGC
GGCGATAATG AGAAGGCATT ATTAGATGTT ATTGCTGATG ATGATTCCGT TGGCCCTGAT
TATCGGGTAC AAAATGAAGA TTTATCTAAT TCGATAGTAG GCTGGTTAAA TGAATTGAAT
ACCAAACAGC GTGAAGTATT AGCGCGGCGT TTTGGTTTGC TCGGATATGA GCCTTCAACA
TTAGAAAATG TCGGTGCCGA AATTGGTCTA ACACGTGAGC GTGTTCGTCA AATTCAAGTC
GAAGCACTTA AACGTTTAAA AGACTTACTA GGGTCGCAAG GACTGTCAGT TGAAGCATTA
TTCAGAGACT AA
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| Protein sequence | MSRKNNTASA ECLVDLAKQP PEVATDKRDL VQQLDIEEKV QDDLQKNLDA TQLYLGEIGF
SPLLTAEEEV FFSRKSLKGC EKSRNRMIES NLRLVVKISR RYNNRGLALL DLIEEGNLGL
IRAVEKFDPE RGFRFSTYAT WWIRQTIERA IMNQTRTIRL PIHIVKELNV YLRTARQLAQ
KLDHEPTAEE IAEKLDVSTG DVSRMLKLNE RITSVDSPLS GDNEKALLDV IADDDSVGPD
YRVQNEDLSN SIVGWLNELN TKQREVLARR FGLLGYEPST LENVGAEIGL TRERVRQIQV
EALKRLKDLL GSQGLSVEAL FRD
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