Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1059 |
Symbol | |
ID | 4278224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1245732 |
End bp | 1246661 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133827 |
Product | peptidase M23B |
Protein accession | YP_749750 |
Protein GI | 114562237 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACCG GTTGGCCAAA CTTTGTGGTC TTAGCAATCA TGCTCACTGG ATGCAGCTTT CAAGCTGATC GTCCCGCACC GGTAGATAGC TTATCGTCAA AAAATCATGG TCCTCGATAT CATAAAGGCT CGTTAAAAAA CGATAAATAT AAAGTAAAGA AAGGCGATAC ACTTTATTCA ATAGCTTGGG GAGCTGGGCG TAATTTTGTC GAAGTTGCTC GTTTGAATCG TTTATCGGCT CCTTATACTA TTTATCCTGG GCAAACGCTT AATTTAGCGG CTACAAATAA TAGTCAATCG GCACCAGCTC GAACATCCCA ACCTTATGTT AATTCAGTGC AAACCCAAGC CGTCACTAAG CCCTATATAT CGAGCTCAGA TAGTTCTAAA TTAAAAACAA TCAAACCAGC AGCCACACCA AACCCAAGCC CAGTAGTCGT TTCGGCCAGA ACGAAAAAAG ATCTTGATCA CAAAGTGAAG CCTGCGTATT CTGTAACAAC TACCCAACAA ACAATTAACC AAAGTGCGAG TAGTTCTGTT GTTAATTTGC CACAGCAAGT TCAGCAATGG CTCTGGCCAG TTAGAGGTCG AATAGTTGGA TATTTTTCGG CATCAGAACA AGGCAATCAA GGTATAAAGA TTGCTGGTAA TCGCGGCGAT ATTATTAAAG CCGCAGCAGA TGGGAGAGTC GTGTATGCCG GCAATGCACT GCGCGGGTAC GGCAACTTAG TTATTATCAA GCACAATGAT GATTTTTTAA GTGCTTATGC GCATGCCGAC ACGATATTGG TTAAAGAAAA GCAATATGTG AGTGCAGGAC AAACAGTTGC AAAAATGGGC AGTACCGGGA CACACCAAGT TATGCTTCAC TTTGAAGTAC GATTTCATGG TAAGTCTGTC AACCCATTAC GATATCTACC TAAACAGTAA
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Protein sequence | MNTGWPNFVV LAIMLTGCSF QADRPAPVDS LSSKNHGPRY HKGSLKNDKY KVKKGDTLYS IAWGAGRNFV EVARLNRLSA PYTIYPGQTL NLAATNNSQS APARTSQPYV NSVQTQAVTK PYISSSDSSK LKTIKPAATP NPSPVVVSAR TKKDLDHKVK PAYSVTTTQQ TINQSASSSV VNLPQQVQQW LWPVRGRIVG YFSASEQGNQ GIKIAGNRGD IIKAAADGRV VYAGNALRGY GNLVIIKHND DFLSAYAHAD TILVKEKQYV SAGQTVAKMG STGTHQVMLH FEVRFHGKSV NPLRYLPKQ
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