Gene Sfri_1055 details

Gene Information

• Locus tag: Sfri_1055
• Symbol: ispF
• ID: 4278220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1242663
• End bp: 1243142
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638133823
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_749746
• Protein GI: 114562233
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATTC GTATCGGTCA TGGTTTTGAT GTACATAAAT TTGGCGGTGA TAGCCCACTG 
GTTTTAGGTG GTGTTACTGT TCCTTATGAC AGTGGACTGA TTGCCCATTC TGACGGCGAT 
GTGGTACTGC ATGCCATTAG TGATGCGATA TTAGGAGCGA TGGCGTTAGG TGATATAGGT 
AAACACTTTC CTGATACTGA TGCTAATTTT GCCGGTGCCG ATAGTCGAGT GCTATTAAAA 
CACTGTTATC AACTTGCACT GCAAAAGCAG TTTGTTTTAG GCAATCTTGA TGTCACTATT 
ATTGCTCAAG CACCTAAGAT GGCGCCACAC ATTGAAGCAA TACGTCAGTG CTTAAGTGCT 
GACTTACAAA CAGATATCGA TAATATTAAT GTTAAAGCGA CAACAACCGA AAATCTCGGT 
TTTACTGGAC GTAAAGAAGG CATTGCTGTT GAAGCTGTTG TGTTGATGAA GAGCCAATAA 

 

Protein sequence

MNIRIGHGFD VHKFGGDSPL VLGGVTVPYD SGLIAHSDGD VVLHAISDAI LGAMALGDIG 
KHFPDTDANF AGADSRVLLK HCYQLALQKQ FVLGNLDVTI IAQAPKMAPH IEAIRQCLSA 
DLQTDIDNIN VKATTTENLG FTGRKEGIAV EAVVLMKSQ