| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1054 |
|---|
| Symbol | ispD |
|---|
| ID | 4278219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1241903 |
|---|
| End bp | 1242601 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638133822 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_749745 |
|---|
| Protein GI | 114562232 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.672006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACA ATCCTCGCTC CATTATTGCA ATTGTGCCTG CTGCAGGCAT TGGCAGCCGC
ATGGGAGCAG ATAAACCTAA GCAATATTTA ATGCTTGGCC AACAAAGCAT TCTTGGCCAT
ACATTAGATA CGTTATTAGC TCATCCTGAT ATAGAACAGG TCATTGTTGC ATTGCATCCA
CAAGACAACT ATTTCAACCA GTTACCACAA TCTCAACATC CTAAATTAAC CCAAGTTGTT
GGTGGTGGAG AGCGTGCTGA TTCTGTTTTA GCAGCATTAG ATTATGCGCA CAACTATAAT
CCAGGGGCGT GGGCTCTCGT TCATGATGCC GCAAGACCTT GTGTAACTCA CCAAGATATC
ACCCAATTGA TTAAGTCTGT CGCCATTCAT CCACAAGGTG CCATTCTTGC TGCGCCCGTT
TGTGACACCA TGAAACGCAG TGACGCCAGT GGGCTTATTG TTCATACCGT TGACCGCTCG
TTGCTATGGC ATGCATTAAC GCCGCAATTT TTCCCAGTCT CGATTTTACG TACTCATTTA
TCGGCTGCAT TAGCAGCGCA GGTACCTATT ACCGATGAAG CCAGTGCCAT GGAATGGGCT
GGGGTTATGC CGGGGTTGGT TAATGGCCGA ATGGATAATA TCAAAGTGAC TCATCCAGAT
GATTTACAAT TGGCTGCTCT GTTTATGTCA CAACAATAG
|
|---|
| Protein sequence | MSNNPRSIIA IVPAAGIGSR MGADKPKQYL MLGQQSILGH TLDTLLAHPD IEQVIVALHP
QDNYFNQLPQ SQHPKLTQVV GGGERADSVL AALDYAHNYN PGAWALVHDA ARPCVTHQDI
TQLIKSVAIH PQGAILAAPV CDTMKRSDAS GLIVHTVDRS LLWHALTPQF FPVSILRTHL
SAALAAQVPI TDEASAMEWA GVMPGLVNGR MDNIKVTHPD DLQLAALFMS QQ
|
|---|
| |