| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1035 |
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| Symbol | |
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| ID | 4277849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1219754 |
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| End bp | 1220899 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638133803 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_749726 |
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| Protein GI | 114562213 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00189778 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTAACT GGTCCACCTT TGACACCCAA ATGATGAGTC GTGCCATCGC CCTTGCCGAG
AAAGGCCGTT ATACAACACG GCCAAATCCT TGTGTCGGTT GTGTCATTGT TTATCAGAAT
AAGATTATTG GTGAAGGTTA TCATCAACGT GCGGGCCAAG GGCATGCCGA AGTTAATGCG
CTGAAAATGG TGCATGATAA TGGCTTGTCT GCTGAAGGTG CCACCGCGTA TGTCACTCTT
GAACCTTGTA GCCATTATGG TCGCACACCA CCTTGTGCTT TAGGCTTAAT TAACGCCAAA
GTTGCCAGAG TTGTGGTCGC AGTGACCGAT GCAAATCCTG AAGTGTCTGG CCGCGGGATT
ACCCTATTAC GTGAGGCTGG TGTTGAGGTT GATGTTGGAT TGCTCTGCGA ACAGGCCTAT
GACCTTAACC TAGGTTTTAT GAAACGGATG AAAACAGGGC TTCCTTGGAT AACCGTCAAA
ATAGCCGCCA GCTTAGACGG TAAAACGGCC TTGTCTAATG GAGTGTCAAA GTGGATTACC
GGCAGTGCAG CAAGAGCTGA TGTGCAAAAA TACCGTGCTA GCCACTGTGC ATTAATCACT
GGTGTTGAAA CCATTCTTGT CGATGATCCT AGCCTTAATG TGCGCTATGA GACGCTAGGT
GAGTTAACCA CTCGTCATAC AAAAGATGAA TTCTTTCAAC CCTTAAGGGT TGTGCTAGAC
AGTCGCGCAA GATTAACCGC AACACAGCAA TTATTTTCAA TTCAAAGTCC TATTTTACTG
GTTTCTGGTT GCCATTATCC CGAAAGCGTC AAGGCAGAAT TTCCAGAACA TGTATCTTTT
CTTCAGTTAA CGTGTGACTC ATCGGGCAGA ATTCCATTGT TAGCCTTGCT AACGTATTTA
GGTCAGCATG CTAATTCTGT TTTAATTGAA GCGGGGGCCA CTTTAGCGGG GGCATTTGTC
GCCCAAGGGC TCGTTGACGA GGTAGTGCTT TATCAAGCGC CTAAAATCCT CGGTAGCCAT
GGACGTAATA TGTTGCAGTT ACCTGATTAC AGTACAATGG AACAAACGCC TGCACTGCAA
CTAATTGATG AACGTAACGT AGGACAAGAT AAGCGTTATA TCCTCAGATA TAATCAACCC
TATTAA
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| Protein sequence | MSNWSTFDTQ MMSRAIALAE KGRYTTRPNP CVGCVIVYQN KIIGEGYHQR AGQGHAEVNA
LKMVHDNGLS AEGATAYVTL EPCSHYGRTP PCALGLINAK VARVVVAVTD ANPEVSGRGI
TLLREAGVEV DVGLLCEQAY DLNLGFMKRM KTGLPWITVK IAASLDGKTA LSNGVSKWIT
GSAARADVQK YRASHCALIT GVETILVDDP SLNVRYETLG ELTTRHTKDE FFQPLRVVLD
SRARLTATQQ LFSIQSPILL VSGCHYPESV KAEFPEHVSF LQLTCDSSGR IPLLALLTYL
GQHANSVLIE AGATLAGAFV AQGLVDEVVL YQAPKILGSH GRNMLQLPDY STMEQTPALQ
LIDERNVGQD KRYILRYNQP Y
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