Gene Sfri_1034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1034 
SymbolnrdR 
ID4277848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1219240 
End bp1219689 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content45% 
IMG OID638133802 
Producttranscriptional regulator NrdR 
Protein accessionYP_749725 
Protein GI114562212 
COG category[K] Transcription 
COG ID[COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 
TIGRFAM ID[TIGR00244] transcriptional regulator NrdR 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0182985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATTGCC CTTTTTGTAG CGCGACCGAT ACCAAAGTTA TAGATTCTCG ATTAGTGGCT 
GATGGTCACC AAGTACGTCG CCGCCGGGAA TGTACTGAAT GCCATGAACG TTTCACCACG 
TTTGAAGGCG CAGAATTAGT CATGCCTCGC GTCATCAAAC GCGACGGCAC TCGACAACCA 
TTCGATGAAG AAAAATTGCG TGGAGGCATG CTACGTGCGG TCGAAAAACG TCCAGTCTCA 
ATTGATGAAA TTGAGCAAGC ATTAACTAAA ATCAAATCAA CGCTGCGCGC GACAGGTGAG 
CGTGAAGTGA ATTCTGAAAT GATTGGTAAT CTGATGATGG AACAGTTGAT GAGCCTTGAT 
AAGGTGGCAT ATATCCGCTT TGCATCGGTT TATCGCGCAT TTGAAGATGT ATCCCAATTT 
GGTGAAGCCA TTGCTAAATT GCAAAAGTAA
 
Protein sequence
MHCPFCSATD TKVIDSRLVA DGHQVRRRRE CTECHERFTT FEGAELVMPR VIKRDGTRQP 
FDEEKLRGGM LRAVEKRPVS IDEIEQALTK IKSTLRATGE REVNSEMIGN LMMEQLMSLD 
KVAYIRFASV YRAFEDVSQF GEAIAKLQK