Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1027 |
Symbol | |
ID | 4277841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1205109 |
End bp | 1208939 |
Gene Length | 3831 bp |
Protein Length | 1276 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133795 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_749718 |
Protein GI | 114562205 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGTTCT TTTTCCAAAG ATGGTTATGC TCACTGTTAT GCTTACTTCT CTCCGTTGCC TTCACTTCAG CCACAAGTGC GAAACAGTTT CAGATAGATA GACTCAATAT CGCAGACGGC TTGCCGTCAA CTATGGTCAC CTCTATCTAT CAGCAAAAAA ATGGTTTCTT ATGGTTTGCC ACCGATGCTG GGGTGAGCCG TTATGATGGC CAAGAGTTTA TCCATTTTCA GTTTTCACCA GGATCTAACA GGCATATATC GAATAACTTT GTTACGGATA TTATCGAAGA CACCTTAGGC AATATTTGGT TTGCCACTGA AGATGGTCTC AATCAACTCA CCGTCGATGA TGAACTTAAC ATCTACCCCA CCTCGCAACA GCCTTTTGCT CAAAATACCA ATTGGATAAT GCGCTTATAC TTGGATTCAA AACAGCAGTT ATGGATAGGT ACAGGCAGTG GATTACAATA TAAACCTGAA AATGAGTCTA ATTTCATCTC GGTTCCATTA TATTTAAATC AGCAAGATAC TCCCGTAGAA ACATCGATTT ACAGCATAGT AGAAGACACT CAGCACCGTC TTTGGGTAGG AACAGATCAT GGTCTCGCAT TATTAGAACC CAACAGTATA ACAATGCGGC TATATCAATC AGATAAAGCA CAAGCAATAT CCACAGCAGA CTCGTCCGTG GCTACGGCAG ATTTATTTAG TGATTACATT CTGACGAGTC AAATAGACCA TCACGGTCAA CTTTGGTTTG GTAGCCAACA TTTTGGCTTA ATTAAATTTA TGCCCAACGA CAACACCTTC CAGCATTTTT TTAGCACAAC ACAAGCAAAA CCAGGTCAAA TCCCCAGTAA CTACATCACT AGCATCGCTA TTGAAGACGA GCAACATATC TGGATCGGTA CCGACAAAGG CGCGGCAAAT TTAACTGTAG CATCCGAACA TTTTGACTGG CTAACCTCGC AGACGTTTAA TCAACAATCA TTACCTACCA ATAATGTTGA TGATGTATTT ATCGACCATT CAGGAGTCGT TTGGTTTGCG ACTAATCAAG GAGCGGCTTA TTACACGCCA TTGAAAAAAT CAAGTCGACT GTATAAACCC CTTGCCAGCC AATCAGAGCT ATCTGGAGGC AATGTTTACG CAATAGCGTT AACACAATCT GGTGATGCCT GGGTAGCAAC AAATAAGGGT ATTGATAAGA TAAACATCGA TAACAAAACC GTTCAATTAG GTCCTTTAAA AGATAAAACC ATTCCATCAT TAATAAACAA TATTTGGAAC GTAAAAACAG ACAAAGACAA TAATCTGTGG TTTTCTGACG CAGAAGGCCT GAGTTTTTAC GATCAACGTT CTGGCACTGT GCAACGCTTT AGTAATAAAG TGAATAATCC CTATGGGTTT CCTAATACTG ATTTCTATAC TGTTGACCCC GACCAAGAAG GCAATGTGTG GATCACAGGC TATTTAGACG CTGGCGTAAT GCTATTTAAC CCACAAAAAG GCTTAATAAA ACATTATTTT AACGATGCGG ATAATCTCTA TACTTCGGGT GGAAATTTCA CCTTCGACAG TTTAATCGCT ACCCAGGGTG AGTTATGGTT AGCCACCACT AACGGTATTT TTATTATTGA TCCTAAAACA GATATCACAT CACATTTAAG TTTAGGTAAT GAAAGAGAGA ACATCCGGAT AGGCGGTATT TACCAAGACG AACAAGGCAT TATGTGGGCG GCAACCCAAG GGCTCGGGTT AGCAAAAATA ATTCCAACGC CAGATGCCCC TCAGGGGTTT GTCATTGAAT ACATTACCCG CAAACAAGGC TTACCAGATA ACCGTTTAAA AGCCGTCATC GGTGATAACC AGGGTAATTT ATGGCTAACG AGCCAGCACA CCTTAACTAA ATATAACCTA AAAACCGGTC AAATAAGTGT TTACCCTAGC GTGATAAACA CCGACAACTT AACTTTTAAT GAAGCAGCGA TTGCCATTTA TCAACACCAG TTACTATTAG GCACTAATAA GGGTGTGATA CAGATAGATA TCGACACTAT TAGCCAAAAT GATTTTGCGC CTCCTGTGCA TATCACTTCG GCAAAAATAG CCAATAAATC GTATATTAAT ATTAACAGCC ATAACCCTCC ACCGAAGCCC ATACTTGATT ACGACAACAA CATGATCCAG TTTTCATTTG CGTCGTTAGA CTATACCGCC CCTAAACGAA ATCGATATCG ATATATGTTA GCGGGGTTCG ACCAAGATTG GCTGACGACA GTGCTACCTC GGGCAATGTA CACTAATCTA GCGGCGGGTG ATTATGTGTT TAAAGTGCAA AGCACCAATA GCGACGGAGT GTGGAGCAAC CAACAGGCAG AATTTGCTTT TAACATTAAA AAAGCCTGGT GGTATTACGC ATTAATAGCT TCGGGCACCA TTATTATACT GATCATGATT TTATTTGGGT TATCTCGAAT TAAACAAATG AAAGAGCTCA GTCGCCGAGC TAATTTTGAC AGCTTAACTG GATTGGCAAA CCGCTTTCAT TTTAATCAAC AGCTGTCATT ACTTATGTCT AATCCATATA ACACCGCTGC GGTCGTGTTT ATCGATTTAG ATCACTTTAA AGAAGTTAAC GATTCTATGG GCCATGATGT AGGCGATGAG CTCATTATCC AAGTTGGTAA GCGGCTTCAG CATTGTTTAA GCCAACAAGA TGTATTAGCT CGACTAGGCG GAGATGAATT TGCCTTAATC ATTCCATACG AGCAAGTTGC GGCTGACGTG AACCGAGATT TAGTCAATAT CATTGAACGA GTTCGTCAAA CGCTCAATAA AGGCTATCAA ATCAATCAAT ATTGGCTAAA CAGTTCTGCC AGTATTGGTG TGGCATGTTT CCCTGACGAT GGTAAAGATG CCAAAACATT ATTAAAACAC GCTGATACAG CCATGTACGC CGCTAAACAG AATGGTCGTA ACGGAAGTTA CTTTTTTAAC GAAACCTTAT CCACGGCATT ATTAGAAAGA TTATTAATTA AAGACCAACT TAATAATGCC ATGTCAGATG CGCAACTCGA AGTACATTAC CAACCAAAAT GTTGTGTTGA TACTCATGAA ATTGTCGGTT TAGAGGCGTT ACTTCGTTGG AATCATCCCC AACACGGCAT GATTTCCCCT AGCCGCTTTA TTGATCAAGC TGAAGACAGC GGCTTAATTA TCGATATCGG ATTATGGGTA CTTGAACAAG CCTGTCAGCA AGGATATCAT TGGCATCAAC AAGGGATACT GAGAGGCAAT ATATCGGTCA ACATTTCACC GGTACAGTTA TCGCAACCGA CCATTGTCGA TGACATCGCA GCCATTTTAG AACGAACCGC CTTTCCTGCT CATCATCTTG AACTTGAAAT TACCGAGTCG TTACTCATTA AAGATTTAAA AACCGCACAA GACGTTCTGT TAGCACTCAA ACAATTACGC GTACGTATTG CTCTAGATGA TTTTGGCAAA GGTTATTCGT CATTAAACTA TTTGACTCAG TTCCCTATTG ATACTTTAAA AATTGATAAG GGATTTTTAA GCAGTATCTT GCCTGAAGAA ACCAGCAATA TAGTATTACG AAACATCATT ACCTTAGGTA ATGAGCTGAA ATTAGATGTC ATTGCAGAAG GCGTCGAAAC TCATGCTCAG CTGCTAAAAT TGAAACAGTA TAATTGTAAA ATAGTTCAGG GTTTTTTATT CAGTCATGCT CTTGATGTCA CTCAATTAGA AATATGCCTT CTACATAACC AGTTAACCTT ATGTGAATAT GTTGAAGTGG AAAACGAATA A
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Protein sequence | MVFFFQRWLC SLLCLLLSVA FTSATSAKQF QIDRLNIADG LPSTMVTSIY QQKNGFLWFA TDAGVSRYDG QEFIHFQFSP GSNRHISNNF VTDIIEDTLG NIWFATEDGL NQLTVDDELN IYPTSQQPFA QNTNWIMRLY LDSKQQLWIG TGSGLQYKPE NESNFISVPL YLNQQDTPVE TSIYSIVEDT QHRLWVGTDH GLALLEPNSI TMRLYQSDKA QAISTADSSV ATADLFSDYI LTSQIDHHGQ LWFGSQHFGL IKFMPNDNTF QHFFSTTQAK PGQIPSNYIT SIAIEDEQHI WIGTDKGAAN LTVASEHFDW LTSQTFNQQS LPTNNVDDVF IDHSGVVWFA TNQGAAYYTP LKKSSRLYKP LASQSELSGG NVYAIALTQS GDAWVATNKG IDKINIDNKT VQLGPLKDKT IPSLINNIWN VKTDKDNNLW FSDAEGLSFY DQRSGTVQRF SNKVNNPYGF PNTDFYTVDP DQEGNVWITG YLDAGVMLFN PQKGLIKHYF NDADNLYTSG GNFTFDSLIA TQGELWLATT NGIFIIDPKT DITSHLSLGN ERENIRIGGI YQDEQGIMWA ATQGLGLAKI IPTPDAPQGF VIEYITRKQG LPDNRLKAVI GDNQGNLWLT SQHTLTKYNL KTGQISVYPS VINTDNLTFN EAAIAIYQHQ LLLGTNKGVI QIDIDTISQN DFAPPVHITS AKIANKSYIN INSHNPPPKP ILDYDNNMIQ FSFASLDYTA PKRNRYRYML AGFDQDWLTT VLPRAMYTNL AAGDYVFKVQ STNSDGVWSN QQAEFAFNIK KAWWYYALIA SGTIIILIMI LFGLSRIKQM KELSRRANFD SLTGLANRFH FNQQLSLLMS NPYNTAAVVF IDLDHFKEVN DSMGHDVGDE LIIQVGKRLQ HCLSQQDVLA RLGGDEFALI IPYEQVAADV NRDLVNIIER VRQTLNKGYQ INQYWLNSSA SIGVACFPDD GKDAKTLLKH ADTAMYAAKQ NGRNGSYFFN ETLSTALLER LLIKDQLNNA MSDAQLEVHY QPKCCVDTHE IVGLEALLRW NHPQHGMISP SRFIDQAEDS GLIIDIGLWV LEQACQQGYH WHQQGILRGN ISVNISPVQL SQPTIVDDIA AILERTAFPA HHLELEITES LLIKDLKTAQ DVLLALKQLR VRIALDDFGK GYSSLNYLTQ FPIDTLKIDK GFLSSILPEE TSNIVLRNII TLGNELKLDV IAEGVETHAQ LLKLKQYNCK IVQGFLFSHA LDVTQLEICL LHNQLTLCEY VEVENE
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