| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1027 |
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| Symbol | |
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| ID | 4277841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1205109 |
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| End bp | 1208939 |
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| Gene Length | 3831 bp |
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| Protein Length | 1276 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133795 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_749718 |
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| Protein GI | 114562205 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGTTCT TTTTCCAAAG ATGGTTATGC TCACTGTTAT GCTTACTTCT CTCCGTTGCC
TTCACTTCAG CCACAAGTGC GAAACAGTTT CAGATAGATA GACTCAATAT CGCAGACGGC
TTGCCGTCAA CTATGGTCAC CTCTATCTAT CAGCAAAAAA ATGGTTTCTT ATGGTTTGCC
ACCGATGCTG GGGTGAGCCG TTATGATGGC CAAGAGTTTA TCCATTTTCA GTTTTCACCA
GGATCTAACA GGCATATATC GAATAACTTT GTTACGGATA TTATCGAAGA CACCTTAGGC
AATATTTGGT TTGCCACTGA AGATGGTCTC AATCAACTCA CCGTCGATGA TGAACTTAAC
ATCTACCCCA CCTCGCAACA GCCTTTTGCT CAAAATACCA ATTGGATAAT GCGCTTATAC
TTGGATTCAA AACAGCAGTT ATGGATAGGT ACAGGCAGTG GATTACAATA TAAACCTGAA
AATGAGTCTA ATTTCATCTC GGTTCCATTA TATTTAAATC AGCAAGATAC TCCCGTAGAA
ACATCGATTT ACAGCATAGT AGAAGACACT CAGCACCGTC TTTGGGTAGG AACAGATCAT
GGTCTCGCAT TATTAGAACC CAACAGTATA ACAATGCGGC TATATCAATC AGATAAAGCA
CAAGCAATAT CCACAGCAGA CTCGTCCGTG GCTACGGCAG ATTTATTTAG TGATTACATT
CTGACGAGTC AAATAGACCA TCACGGTCAA CTTTGGTTTG GTAGCCAACA TTTTGGCTTA
ATTAAATTTA TGCCCAACGA CAACACCTTC CAGCATTTTT TTAGCACAAC ACAAGCAAAA
CCAGGTCAAA TCCCCAGTAA CTACATCACT AGCATCGCTA TTGAAGACGA GCAACATATC
TGGATCGGTA CCGACAAAGG CGCGGCAAAT TTAACTGTAG CATCCGAACA TTTTGACTGG
CTAACCTCGC AGACGTTTAA TCAACAATCA TTACCTACCA ATAATGTTGA TGATGTATTT
ATCGACCATT CAGGAGTCGT TTGGTTTGCG ACTAATCAAG GAGCGGCTTA TTACACGCCA
TTGAAAAAAT CAAGTCGACT GTATAAACCC CTTGCCAGCC AATCAGAGCT ATCTGGAGGC
AATGTTTACG CAATAGCGTT AACACAATCT GGTGATGCCT GGGTAGCAAC AAATAAGGGT
ATTGATAAGA TAAACATCGA TAACAAAACC GTTCAATTAG GTCCTTTAAA AGATAAAACC
ATTCCATCAT TAATAAACAA TATTTGGAAC GTAAAAACAG ACAAAGACAA TAATCTGTGG
TTTTCTGACG CAGAAGGCCT GAGTTTTTAC GATCAACGTT CTGGCACTGT GCAACGCTTT
AGTAATAAAG TGAATAATCC CTATGGGTTT CCTAATACTG ATTTCTATAC TGTTGACCCC
GACCAAGAAG GCAATGTGTG GATCACAGGC TATTTAGACG CTGGCGTAAT GCTATTTAAC
CCACAAAAAG GCTTAATAAA ACATTATTTT AACGATGCGG ATAATCTCTA TACTTCGGGT
GGAAATTTCA CCTTCGACAG TTTAATCGCT ACCCAGGGTG AGTTATGGTT AGCCACCACT
AACGGTATTT TTATTATTGA TCCTAAAACA GATATCACAT CACATTTAAG TTTAGGTAAT
GAAAGAGAGA ACATCCGGAT AGGCGGTATT TACCAAGACG AACAAGGCAT TATGTGGGCG
GCAACCCAAG GGCTCGGGTT AGCAAAAATA ATTCCAACGC CAGATGCCCC TCAGGGGTTT
GTCATTGAAT ACATTACCCG CAAACAAGGC TTACCAGATA ACCGTTTAAA AGCCGTCATC
GGTGATAACC AGGGTAATTT ATGGCTAACG AGCCAGCACA CCTTAACTAA ATATAACCTA
AAAACCGGTC AAATAAGTGT TTACCCTAGC GTGATAAACA CCGACAACTT AACTTTTAAT
GAAGCAGCGA TTGCCATTTA TCAACACCAG TTACTATTAG GCACTAATAA GGGTGTGATA
CAGATAGATA TCGACACTAT TAGCCAAAAT GATTTTGCGC CTCCTGTGCA TATCACTTCG
GCAAAAATAG CCAATAAATC GTATATTAAT ATTAACAGCC ATAACCCTCC ACCGAAGCCC
ATACTTGATT ACGACAACAA CATGATCCAG TTTTCATTTG CGTCGTTAGA CTATACCGCC
CCTAAACGAA ATCGATATCG ATATATGTTA GCGGGGTTCG ACCAAGATTG GCTGACGACA
GTGCTACCTC GGGCAATGTA CACTAATCTA GCGGCGGGTG ATTATGTGTT TAAAGTGCAA
AGCACCAATA GCGACGGAGT GTGGAGCAAC CAACAGGCAG AATTTGCTTT TAACATTAAA
AAAGCCTGGT GGTATTACGC ATTAATAGCT TCGGGCACCA TTATTATACT GATCATGATT
TTATTTGGGT TATCTCGAAT TAAACAAATG AAAGAGCTCA GTCGCCGAGC TAATTTTGAC
AGCTTAACTG GATTGGCAAA CCGCTTTCAT TTTAATCAAC AGCTGTCATT ACTTATGTCT
AATCCATATA ACACCGCTGC GGTCGTGTTT ATCGATTTAG ATCACTTTAA AGAAGTTAAC
GATTCTATGG GCCATGATGT AGGCGATGAG CTCATTATCC AAGTTGGTAA GCGGCTTCAG
CATTGTTTAA GCCAACAAGA TGTATTAGCT CGACTAGGCG GAGATGAATT TGCCTTAATC
ATTCCATACG AGCAAGTTGC GGCTGACGTG AACCGAGATT TAGTCAATAT CATTGAACGA
GTTCGTCAAA CGCTCAATAA AGGCTATCAA ATCAATCAAT ATTGGCTAAA CAGTTCTGCC
AGTATTGGTG TGGCATGTTT CCCTGACGAT GGTAAAGATG CCAAAACATT ATTAAAACAC
GCTGATACAG CCATGTACGC CGCTAAACAG AATGGTCGTA ACGGAAGTTA CTTTTTTAAC
GAAACCTTAT CCACGGCATT ATTAGAAAGA TTATTAATTA AAGACCAACT TAATAATGCC
ATGTCAGATG CGCAACTCGA AGTACATTAC CAACCAAAAT GTTGTGTTGA TACTCATGAA
ATTGTCGGTT TAGAGGCGTT ACTTCGTTGG AATCATCCCC AACACGGCAT GATTTCCCCT
AGCCGCTTTA TTGATCAAGC TGAAGACAGC GGCTTAATTA TCGATATCGG ATTATGGGTA
CTTGAACAAG CCTGTCAGCA AGGATATCAT TGGCATCAAC AAGGGATACT GAGAGGCAAT
ATATCGGTCA ACATTTCACC GGTACAGTTA TCGCAACCGA CCATTGTCGA TGACATCGCA
GCCATTTTAG AACGAACCGC CTTTCCTGCT CATCATCTTG AACTTGAAAT TACCGAGTCG
TTACTCATTA AAGATTTAAA AACCGCACAA GACGTTCTGT TAGCACTCAA ACAATTACGC
GTACGTATTG CTCTAGATGA TTTTGGCAAA GGTTATTCGT CATTAAACTA TTTGACTCAG
TTCCCTATTG ATACTTTAAA AATTGATAAG GGATTTTTAA GCAGTATCTT GCCTGAAGAA
ACCAGCAATA TAGTATTACG AAACATCATT ACCTTAGGTA ATGAGCTGAA ATTAGATGTC
ATTGCAGAAG GCGTCGAAAC TCATGCTCAG CTGCTAAAAT TGAAACAGTA TAATTGTAAA
ATAGTTCAGG GTTTTTTATT CAGTCATGCT CTTGATGTCA CTCAATTAGA AATATGCCTT
CTACATAACC AGTTAACCTT ATGTGAATAT GTTGAAGTGG AAAACGAATA A
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| Protein sequence | MVFFFQRWLC SLLCLLLSVA FTSATSAKQF QIDRLNIADG LPSTMVTSIY QQKNGFLWFA
TDAGVSRYDG QEFIHFQFSP GSNRHISNNF VTDIIEDTLG NIWFATEDGL NQLTVDDELN
IYPTSQQPFA QNTNWIMRLY LDSKQQLWIG TGSGLQYKPE NESNFISVPL YLNQQDTPVE
TSIYSIVEDT QHRLWVGTDH GLALLEPNSI TMRLYQSDKA QAISTADSSV ATADLFSDYI
LTSQIDHHGQ LWFGSQHFGL IKFMPNDNTF QHFFSTTQAK PGQIPSNYIT SIAIEDEQHI
WIGTDKGAAN LTVASEHFDW LTSQTFNQQS LPTNNVDDVF IDHSGVVWFA TNQGAAYYTP
LKKSSRLYKP LASQSELSGG NVYAIALTQS GDAWVATNKG IDKINIDNKT VQLGPLKDKT
IPSLINNIWN VKTDKDNNLW FSDAEGLSFY DQRSGTVQRF SNKVNNPYGF PNTDFYTVDP
DQEGNVWITG YLDAGVMLFN PQKGLIKHYF NDADNLYTSG GNFTFDSLIA TQGELWLATT
NGIFIIDPKT DITSHLSLGN ERENIRIGGI YQDEQGIMWA ATQGLGLAKI IPTPDAPQGF
VIEYITRKQG LPDNRLKAVI GDNQGNLWLT SQHTLTKYNL KTGQISVYPS VINTDNLTFN
EAAIAIYQHQ LLLGTNKGVI QIDIDTISQN DFAPPVHITS AKIANKSYIN INSHNPPPKP
ILDYDNNMIQ FSFASLDYTA PKRNRYRYML AGFDQDWLTT VLPRAMYTNL AAGDYVFKVQ
STNSDGVWSN QQAEFAFNIK KAWWYYALIA SGTIIILIMI LFGLSRIKQM KELSRRANFD
SLTGLANRFH FNQQLSLLMS NPYNTAAVVF IDLDHFKEVN DSMGHDVGDE LIIQVGKRLQ
HCLSQQDVLA RLGGDEFALI IPYEQVAADV NRDLVNIIER VRQTLNKGYQ INQYWLNSSA
SIGVACFPDD GKDAKTLLKH ADTAMYAAKQ NGRNGSYFFN ETLSTALLER LLIKDQLNNA
MSDAQLEVHY QPKCCVDTHE IVGLEALLRW NHPQHGMISP SRFIDQAEDS GLIIDIGLWV
LEQACQQGYH WHQQGILRGN ISVNISPVQL SQPTIVDDIA AILERTAFPA HHLELEITES
LLIKDLKTAQ DVLLALKQLR VRIALDDFGK GYSSLNYLTQ FPIDTLKIDK GFLSSILPEE
TSNIVLRNII TLGNELKLDV IAEGVETHAQ LLKLKQYNCK IVQGFLFSHA LDVTQLEICL
LHNQLTLCEY VEVENE
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