Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1024 |
Symbol | |
ID | 4277139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1201920 |
End bp | 1203422 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638133792 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_749715 |
Protein GI | 114562202 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTATT TACTAATAAC AGTGTTGTTT ATGATTGTGA TCATGCTGTG TACCATTGCA TGTCTCCATT GGCGTCAGCA TCGTTTTATT AAACAATTAA CTCACTCGTT AGAATTACAA TTACTCAATC AAGATTCATT TAACATAGAT TCCCCTTCAA AATCCTTAAA ACCGCTCATT AATGTCCTTC ATCATTTGCA TCAATCAAGC CTATTTAGCA CCGAACGAGA TAAGCTAACT GGTTTAGCTA ACCGTGTCGG CTTTAAACGA AAAATGTTGT CAAAAATGCC TATTTCAGAA GGTATGTTAG TGCTGGTGGA TATTCGTCAA TTTCGTTTTG TGAATGATTT ATTTGGTTTT TTATTTGGTG ACAAACTGCT GAAAGCTTTT GCCAAGCGGA TAGATAACCT GAACTGTAAA GCACAGTTCA TCTCACGTAT GAACGGTAAT GAGTTCTTGT TGTTTTTCCA GCAACCGTTG ACTATCGAGC AATTGCAAAC AATCAAAAAT GACTTACAAA GCCCATTTGA AATTGAACAA CAACCAATCA GTATCAAAAT GCAGCTCGGA GTGTTGTCGT TAAATGAGCA TCATGCTGAT GTCAGTTTGA TGTTGCGCCG TTTAGATTTA GCACTGAAGA AAGCCAAAGC ATTAAAACAG CCGATTGCTT TTTACGACCA AGATGATGAT AAAGCACAAT ACCGAGAATT GTTGATTATT AATGGCTTAC CTAAAGGGTT AAAGCAAGGT CAATTATTTA TGGTATTTCA ACCAAAACTA GATATAAAAA GCGGCCGATG TAAGCAGGTC GAAGCGTTAA TTCGTTGGCA ACATGAAGGC TTAGGATTAA TTTCTCCAAA TGAATTTATT CCATTAGCGG AACAGACCGG AATGATCGAT ATTCTGAGTA GTTGGGTGTT AGATAACGTA TTAGCTCAAC AAGCCAAATG GCGAAATATG GGTGTTTACG TTAATGTAGC CATTAATTTG TCATCTACTG ACTTAGACAA TCCAAACCTT GCAGCCGATG TCGCCACCAA GCTATCCCAG TATCTGGTTC CTGCCGAAAC CATTACCATT GAAATCACTG AAAGTGTGTT GATGAAATCG CTCGAGCAAA CGATTGTTAC CTTAAATCAA TTACGTGATA TTGGGGTAAA ACTTGCCATT GATGATTTTG GCACTGGCCA TTCTTCTTTA GCTTATTTGC GTCATTTACC TGTTGATGAA GTGAAAATTG ATAAAGCCTT TTTAGATGAG TTTGAAACCT CTCACGCGGC GAAACAAATT GTGAAGACGA GTATCGAACT GGCTAAAAAT TTAGGTTTTG AAGTGACGGT TGAAGGCGTT GAATCTAAGT CGGTATTAGA TGCATTACAT CTTTTTGGAG TCGATACCAT TCAAGGTGAT TACTTTGCTA AACCATCTAC TGCCAGTGAG TTTGAACATC TTTATCCGCA ACTTAATTAT CAGCAACATA ATCATCTGCA GCATAATCAT TGA
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Protein sequence | MNYLLITVLF MIVIMLCTIA CLHWRQHRFI KQLTHSLELQ LLNQDSFNID SPSKSLKPLI NVLHHLHQSS LFSTERDKLT GLANRVGFKR KMLSKMPISE GMLVLVDIRQ FRFVNDLFGF LFGDKLLKAF AKRIDNLNCK AQFISRMNGN EFLLFFQQPL TIEQLQTIKN DLQSPFEIEQ QPISIKMQLG VLSLNEHHAD VSLMLRRLDL ALKKAKALKQ PIAFYDQDDD KAQYRELLII NGLPKGLKQG QLFMVFQPKL DIKSGRCKQV EALIRWQHEG LGLISPNEFI PLAEQTGMID ILSSWVLDNV LAQQAKWRNM GVYVNVAINL SSTDLDNPNL AADVATKLSQ YLVPAETITI EITESVLMKS LEQTIVTLNQ LRDIGVKLAI DDFGTGHSSL AYLRHLPVDE VKIDKAFLDE FETSHAAKQI VKTSIELAKN LGFEVTVEGV ESKSVLDALH LFGVDTIQGD YFAKPSTASE FEHLYPQLNY QQHNHLQHNH
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