| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1005 |
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| Symbol | deoD |
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| ID | 4278379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1176375 |
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| End bp | 1177085 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133773 |
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| Product | purine nucleoside phosphorylase |
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| Protein accession | YP_749696 |
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| Protein GI | 114562183 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0813] Purine-nucleoside phosphorylase |
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| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.622952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTACAC CACATATTAA TGCAGTTGAA GGTGCTTTTG CTGAAACGGT ACTTTTCCCA
GGCGATCCAT TACGTGCAAA ATACATTGCT GAGACATTTT TAGAAAATGT TGAGCAAGTG
ACTGATGTAC GTAACATGCT AGGTTTTACC GGTACATATA AAGGTAAGCG TATTTCTGTT
ATGGGTTCAG GTATGGGTAT CCCATCTTGT TCAATCTATG CACACGAACT TATCAAAGAC
TACGGTGTTA AGAATTTAAT CCGTGTTGGT ACTTGTGGCG CAATCAGCAC TGACGTAAAA
GTACGTGATG TGATTATCGG TATGGGTGCA TGTACTGACT CTAGAGTTAA CCGTTTACGT
TTTAAAGATA ACGATTTTGC TGCAATCGCA GACTACAGCT TACTAAGTGC TGTTGTTGAT
TCGGCTAAAG CACACGGCAC TAAAATCCGT GTTGGTAACG TTTTCTCTGC CGACTTATTT
TATACTCCAG ATCCTCAAAT GTTTGATGTT ATGGAAAAAA TGGGTATTTT AGGCGTCGAG
ATGGAAGCTG CTGGTTTATA CGGTGTAGCA CATGAATTAG GCGCTAAAGC GTTATGTGTT
GTAACTGTAT CAGACCACAT TCGTACCGGT GAGAAGACTA CCTCTGATGA GCGTCAAACA
ACATTCAGCG ACATGATTAT CATGACTTTA GATGCAGCGT TAACACTGTA A
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| Protein sequence | MATPHINAVE GAFAETVLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV
MGSGMGIPSC SIYAHELIKD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSRVNRLR
FKDNDFAAIA DYSLLSAVVD SAKAHGTKIR VGNVFSADLF YTPDPQMFDV MEKMGILGVE
MEAAGLYGVA HELGAKALCV VTVSDHIRTG EKTTSDERQT TFSDMIIMTL DAALTL
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