| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1003 |
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| Symbol | deoA |
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| ID | 4278377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1173712 |
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| End bp | 1175043 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133771 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_749694 |
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| Protein GI | 114562181 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.028852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTTAG CTCAAGAAAT TATTCGTAAA AAACGTAATG GCGATGTATT AAGCACTGCA
GAAATTCAAT TCTTTGTTGA TGGCATTACT CATAACACGG TTTCAGAAGG CCAAATTGCT
GCGTTCGGCA TGGCAGTGTA TTTCAAAGAT ATGAATATGG ATGAACGGAT TGCATTAACG
ATTGCGATGC GTGATTCCGG AACCGTATTA AATTGGGATT CTCTGGGCCT CAATGGCCCG
ATTATCGATA AGCATAGCAC TGGTGGTGTT GGCGATGTAA TCAGCCTAAT GCTTGGCCCT
ATGGCTGCAG CTTGTGGCGG TTATGTGCCA ATGATTTCAG GTCGTGGCTT AGGTCACACC
GGTGGTACGT TAGATAAATT TGATGCCATT CCTGGTTATC AAACTGAGCC TTCAAGTGAA
TTATTCCGCA AAGTGGTTAA AGACGCTGGT GTTGCCATTA TTGGTCAAAC CGGTGACTTA
GTCCCTGCTG ATAAGCGTTT CTATTCGATT CGTGATAATA CCGCCACCGT TGAATCTATT
TCGTTAATCA CCGCATCTAT TTTATCTAAA AAGTTAGCCG CGGGGCTTGA TGCTCTAGCA
ATGGATGTCA AAGTCGGCAG CGGTGCATTT ATGCCAACTT ATGAAGCATC TGAAGAATTA
GCTCGCAGTA TTACTGCTGT TGCTAATGGC GCAGGAACTA AAACAACGGC ATTGTTAACT
GACATGAACC AAGTATTGGC TTCGTGTGCA GGTAATGCGG TTGAGGTTCG TGAGGCGATA
AACTTTTTGA CTGGTCAATA TCGTAATCCA CGTTTATATG CTGTCACCAT GGGATTATGT
GCAGAAATGC TAATTTTGGG TGGTATTGCA CAGAATGAAG CTGAAGCTCG TCATAAACTA
AATACTGTAT TAGATAATGG TAAAGCAGCA GAGGCTTTTG CTAAAATGGT ATCTGGCTTA
GGTGGCCCAA CAGACTTTGT TGAGGCATAT GATAAGTATT TACCTCATGC GAAAATTGTA
CGACCTGTAT ATGCCAACAC ATCTGGCTTT GCTTACAAAA TGGATACACG AGAACTTGGT
TTAGCCGTAG TGACCTTAGG TGGTGGACGT CGCAAACCAG GTGATGCACT GGATTACAGT
GTTGGATTAA CTCAAGTATG CGCATTGGGT CAGGAAGTTA ACAAAGACGT TCCGTTAGCG
ATGATCCATG CTCAATCTGA AGATGCTTTC GCCGAAGCTG CCGCTGCTAT TCAGCAAGCC
ATTATTATTG GTGATAGCGC GCCTGAGAAA ACGCCTGAAA TATATCGTTA TATTCGCGCT
TCAGATTTAT AA
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| Protein sequence | MFLAQEIIRK KRNGDVLSTA EIQFFVDGIT HNTVSEGQIA AFGMAVYFKD MNMDERIALT
IAMRDSGTVL NWDSLGLNGP IIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKDAG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLAAGLDALA MDVKVGSGAF MPTYEASEEL ARSITAVANG AGTKTTALLT
DMNQVLASCA GNAVEVREAI NFLTGQYRNP RLYAVTMGLC AEMLILGGIA QNEAEARHKL
NTVLDNGKAA EAFAKMVSGL GGPTDFVEAY DKYLPHAKIV RPVYANTSGF AYKMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTQVCALG QEVNKDVPLA MIHAQSEDAF AEAAAAIQQA
IIIGDSAPEK TPEIYRYIRA SDL
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