| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0999 |
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| Symbol | |
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| ID | 4278373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1169028 |
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| End bp | 1169789 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638133767 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_749690 |
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| Protein GI | 114562177 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000160958 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGATA CTCATGCCCA TCTCGACATG TCAGAGTTCG ATAATGATAG AGCACAATTA
TTCGATGCCA TGCATCACCA TGGTATTAGC TCTGCTATTT TACCAGGAGT GTCAGTCGAT
CAATGGCAAA AGCAAATCCT AATAGCGCAG CAGTTTAATT GTTATTTCTC ACTCGGTATT
CATCCTTGGT ATGTGCCGGA TGATATTGAT GCGGCTATTA TTACACTTGA AGCAACGATA
CAACAATATA GCAAGAATAG GCGTTTGGTT GCTGTTGGGG AGTGTGGGCT GGATAAATTA
CATCATTGGT CAGATAAACA ATTGTTGTTA CTTGAGAAAC AGTTATCACT TGCTCAAATT
TATCAATTGC CCGTCATTTT ACATGCCGTT AAAGCTCATC AAGAATTATT GTTATTGTTG
GATCGTATTA AGCTATCTAA AGGCGGTGTT GTACATGGAT TTTATGGCAA CAGTGATATT
GCGAAACGTT ATATTTCGCT GGGTTTTAAA TTAGGCATTG GTGCTTTAAT ACTCAATCCA
AGTGCAAAAA AGCTTCGAGA AACAGTGGTT AATTTACCTT TAGAGCACTT TTTATTGGAA
ACGGACTCGC CAAGCATGCC ACCTTTTGAC CATCCTAAAT CACGAAACAC TCCTCTTATT
CTTCCTCGAA TTGTGTCCGA AATCGCATTT TTGAAGAAAA AGCCTACTGT TTGTATATTA
GAACAGTTGA ATAAAAATGC GTTGCAACTG TTTGAGCTTT AA
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| Protein sequence | MIDTHAHLDM SEFDNDRAQL FDAMHHHGIS SAILPGVSVD QWQKQILIAQ QFNCYFSLGI
HPWYVPDDID AAIITLEATI QQYSKNRRLV AVGECGLDKL HHWSDKQLLL LEKQLSLAQI
YQLPVILHAV KAHQELLLLL DRIKLSKGGV VHGFYGNSDI AKRYISLGFK LGIGALILNP
SAKKLRETVV NLPLEHFLLE TDSPSMPPFD HPKSRNTPLI LPRIVSEIAF LKKKPTVCIL
EQLNKNALQL FEL
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