| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0997 |
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| Symbol | prfC |
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| ID | 4278371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1167173 |
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| End bp | 1168753 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133765 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_749688 |
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| Protein GI | 114562175 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0156098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGGCA ATAAAGTTGA GGTCGACAAG CGTCGTACCT TCGCCATCAT TTCGCACCCC
GATGCGGGTA AAACCACCAT CACCGAAAAA GTACTTTTAT TCGGAAACGC CTTACAAAAG
GCTGGCACGG TAAAAGGCAA AAAGTCTGGT CAACATGCTA AATCTGATTG GATGGAAATG
GAAAAAGATC GTGGTATTTC GATTACCACT TCTGTGATGC AATTTCCTTA CGGTGGCGCG
CTCATCAATT TACTTGATAC GCCTGGTCAC GAAGACTTTT CAGAAGACAC TTACCGTACA
CTAACCGCAG TAGATTCTTG TTTAATGGTT ATTGACTCCG CGAAAGGTGT TGAAGATCGT
ACCATTAAGC TTATGGAAGT GACGCGTTTA CGTGACACAC CTATTGTGAC ATTCATGAAC
AAATGTGATC GTGATATTCG CGACCCCATT GAATTGATGG ATGAAGTAGA AGACATCTTA
AAAATAGCTT GTGCACCTAT AACTTGGCCA ATAGGTTCGG GTAAGGAATT CAAAGGTGTG
TATCACATCT TGCGTGATGA AATCATTTTA TACCAGAGCG GTATGGGCCA TACCATCCAA
GAAGAACGCA TTATTAAAGG ATTACATAAT CCTGAATTAG ATAAAGTGCT TGGATCGTAC
GCCAATGAAA TACGCGATGA AATGGAACTT GTTGCCGGCG CTTCAAATGA ATTCAATCAA
GAAGCTTTTC TAAAAGGCGA GCTTACGCCA GTATATTTTG GTACAGCCTT GGGTAACTTC
GGTGTGGATC ATATTTTGGA TGGCATCGTT GAGTGGGCTC CAAAGCCGCT TCCTCGTGAA
AGTGATGTCC GAAATGTCAC GCCGGATGAA GAAAAGTTCT CTGGCTTTAT TTTTAAAATT
CAAGCCAATA TGGATCCAAA ACATCGAGAC CGTGTTGCCT TTATGCGTGT TTGCTCAGGT
CGATATGAGC AAGGTATGAA AATGCACCAT GTGCGTATCG GTAAAGATGT TAATGTCAGC
GATGCTTTGA CCTTTATGGC TGGAGATCGA AGCCGTGCTG AAGCGGCCTA TCCAGGCGAT
ATCATTGGAT TACATAATCA TGGCACCATG CGAATTGGTG ATACATTTAC TCAAGGCGAA
AAACTACGCT TTACTGGGGT GCCAAACTTT GCACCTGAAA TGTTCCGTCG TATTCGTTTA
AAAGATCCAC TAAAACAAAA GCAGTTACTT AAAGGCTTAG TACAATTATC TGAAGAGGGA
GCTGTACAGG TCTTCAGACC AATTGATTCT AACGATTTAA TCGTAGGTGC GGTTGGTGTG
CTACAGTTTG AAGTGGTTGT TGGACGATTA AAAAGTGAAT ATAACGTAGA AGCTATTTAC
GAAGGTATCA GTGTGAGTAC CGCACGTTGG GTGTATTGCA AAGATGAGCG TAAATTAGAA
GAGTTTCGTC GTAAATGTAG TCAAAATTTA GCCCTCGATG GCGGAAATAA CTTGACCTAT
ATTGCTCCAA CAATGGTTAA TCTAAATTTA TCTATGGAAC GCTACCCAGA TGTTGAGTTT
GCCAAAACAC GCGAACATTA A
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| Protein sequence | MSGNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYGGA LINLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEDR
TIKLMEVTRL RDTPIVTFMN KCDRDIRDPI ELMDEVEDIL KIACAPITWP IGSGKEFKGV
YHILRDEIIL YQSGMGHTIQ EERIIKGLHN PELDKVLGSY ANEIRDEMEL VAGASNEFNQ
EAFLKGELTP VYFGTALGNF GVDHILDGIV EWAPKPLPRE SDVRNVTPDE EKFSGFIFKI
QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR SRAEAAYPGD
IIGLHNHGTM RIGDTFTQGE KLRFTGVPNF APEMFRRIRL KDPLKQKQLL KGLVQLSEEG
AVQVFRPIDS NDLIVGAVGV LQFEVVVGRL KSEYNVEAIY EGISVSTARW VYCKDERKLE
EFRRKCSQNL ALDGGNNLTY IAPTMVNLNL SMERYPDVEF AKTREH
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